(Q47894368)

10 July 2018

title

A-to-I RNA editing is developmentally regulated and generally adaptive for sexual reproduction in Neurospora crassa (English)

1 reference

10 July 2018

protein arginine N-methyltransferase 1

main subject

SET-7

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RNA dependent RNA polymerase

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histone acetyl transferase-2

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SIR2 family histone deacetylase

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serine/threonine-protein kinase CBK1

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lysine-specific histone demethylase Aof2

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suppressor of ascus dominance-3 protein

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histone acetyltransferase GCN5

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UPF0183 domain-containing protein

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histone deacetylase RPD3

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NAD-dependent deacetylase sirtuin-2

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JmjC domain-containing histone demethylation protein 3D

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histone deacetylase phd1

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protein arginine methyltransferase RmtB

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dicer-like protein 2

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defective in DNA methylation-9 protein

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Protein arginine N-methyltransferase HSL7

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protein arginine N-methyltransferase HSL7, variant 1

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JmjC domain-containing protein

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histone deacetylase HDA1

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SET-9

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histone acetyltransferase type B catalytic subunit

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SET-6

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ATRX

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hypothetical protein, variant 1

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QDE-2-interacting protein

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SIR2 family histone deacetylase

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ubiquitin ligase subunit CulD

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RNA-dependent RNA polymerase

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Hst3p

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DNA damage-binding protein 1

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DNA methylation modulator-2

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DNA methylation modulator-2, variant 1

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dicer-like protein 1

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histone deacetylase HosB

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hypothetical protein, variant 1

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defective in methylation-7 protein

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post-transcriptional silencing protein QDE-2

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post-transcriptional silencing protein QDE-2, variant 1

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chromatin regulatory protein sir2

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mst2

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poly(A)-ribonuclease-1

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NAD-dependent deacetylase sirtuin-5

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meiotic silencing suppressor 2

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histone acetyltransferase

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DNA methyltransferase Dim-2

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Neurospora crassa

object named as

Neurospora crassa

1 reference

1

1 reference

PubMed publication ID

28847945

6 February 2018

http://europepmc.org/abstract/MED/28847945

author name string

Yang Li

2

1 reference

10 July 2018

Daipeng Chen

3

1 reference

10 July 2018

Zhaomei Qi

4

1 reference

10 July 2018

Qinhu Wang

5

1 reference

10 July 2018

Jianhua Wang

6

1 reference

10 July 2018

Cong Jiang

7

1 reference

10 July 2018

Jin-Rong Xu

8

1 reference

10 July 2018

language of work or name

English

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publication date

28 August 2017

1 reference

10 July 2018

Proceedings of the National Academy of Sciences of the United States of America

published in

1 reference

10 July 2018

volume

114

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10 July 2018

issue

37

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10 July 2018

page(s)

E7756-E7765

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10 July 2018

RNA Editing During Sexual Development Occurs in Distantly Related Filamentous Ascomycetes

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Adaptation of A-to-I RNA editing in Drosophila.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Evolutionary analysis reveals regulatory and functional landscape of coding and non-coding RNA editing.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

A-to-I RNA editing independent of ADARs in filamentous fungi.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

The Landscape of A-to-I RNA Editome Is Shaped by Both Positive and Purifying Selection

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Genome-wide A-to-I RNA editing in fungi independent of ADAR enzymes

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

A-to-I editing of coding and non-coding RNAs by ADARs

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Profiling RNA editing in human tissues: towards the inosinome Atlas

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

HISAT: a fast spliced aligner with low memory requirements

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

The origin of the ADAR gene family and animal RNA editing

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Elevated mutation rate during meiosis in Saccharomyces cerevisiae

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

The majority of transcripts in the squid nervous system are extensively recoded by A-to-I RNA editing

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Genome-wide characterization of light-regulated genes in Neurospora crassa.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Human coding RNA editing is generally nonadaptive

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Global analysis of serine/threonine and tyrosine protein phosphatase catalytic subunit genes in Neurospora crassa reveals interplay between phosphatases and the p38 mitogen-activated protein kinase

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Global gene expression and focused knockout analysis reveals genes associated with fungal fruiting body development in Neurospora crassa

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

A comparative systems analysis of polysaccharide-elicited responses in Neurospora crassa reveals carbon source-specific cellular adaptations

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Neurospora crassa, a model system for epigenetics research

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Early colony establishment in Neurospora crassa requires a MAP kinase regulatory network.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

REDItools: high-throughput RNA editing detection made easy

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

A role for A-to-I RNA editing in temperature adaptation

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Molecular dissection of Neurospora Spore killer meiotic drive elements

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

RNA interference pathways in fungi: mechanisms and functions

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Auto-regulatory RNA editing fine-tunes mRNA re-coding and complex behaviour in Drosophila

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Induction of lignocellulose-degrading enzymes in Neurospora crassa by cellodextrins

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Fast gapped-read alignment with Bowtie 2

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Rediscovery by Whole Genome Sequencing: Classical Mutations and Genome Polymorphisms in Neurospora crassa.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Roles for receptors, pheromones, G proteins, and mating type genes during sexual reproduction in Neurospora crassa

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

RNA editing underlies temperature adaptation in K+ channels from polar octopuses

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

15 July 2018

ViennaRNA Package 2.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Global analysis of serine-threonine protein kinase genes in Neurospora crassa

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Massive changes in genome architecture accompany the transition to self-fertility in the filamentous fungus Neurospora tetrasperma

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

High-throughput production of gene replacement mutants in Neurospora crassa

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

BamTools: a C++ API and toolkit for analyzing and managing BAM files

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

DNA methylation and normal chromosome behavior in Neurospora depend on five components of a histone methyltransferase complex, DCDC

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

High-throughput construction of gene deletion cassettes for generation of Neurospora crassa knockout strains

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Proteome diversification by adenosine to inosine RNA editing

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Functions and regulation of RNA editing by ADAR deaminases

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

RNA editing: a driving force for adaptive evolution?

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Origins and evolution of ADAR-mediated RNA editing

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Neurospora as a model fungus for studies in cytogenetics and sexual biology at Stanford

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Phenotype of a mechanosensitive channel mutant, mid-1, in a filamentous fungus, Neurospora crassa

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

PAML 4: phylogenetic analysis by maximum likelihood

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Sex increases the efficacy of natural selection in experimental yeast populations

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Cellular localization and role of kinase activity of PMK1 in Magnaporthe grisea

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

The COP9 signalosome (CSN): an evolutionary conserved proteolysis regulator in eukaryotic development

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

WebLogo: A Sequence Logo Generator

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

MUSCLE: multiple sequence alignment with high accuracy and high throughput

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

RNA editing by adenosine deaminases that act on RNA

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

The ham-2 locus, encoding a putative transmembrane protein, is required for hyphal fusion in Neurospora crassa.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

dim-2 encodes a DNA methyltransferase responsible for all known cytosine methylation in Neurospora

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Perspective: sex, recombination, and the efficacy of selection--was Weismann right?

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

dADAR, a Drosophila double-stranded RNA-specific adenosine deaminase is highly developmentally regulated and is itself a target for RNA editing

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

RNA editing generates a diverse array of transcripts encoding squid Kv2 K+ channels with altered functional properties

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

The role of RNA editing in controlling glutamate receptor channel properties.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Rapid isolation of high molecular weight plant DNA

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Rearrangement of duplicated DNA in specialized cells of Neurospora

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

RNA editing in brain controls a determinant of ion flow in glutamate-gated channels

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Trade-off between Transcriptome Plasticity and Genome Evolution in Cephalopods.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Efficient approaches for generating GFP fusion and epitope-tagging constructs in filamentous fungi.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

ATF-1 transcription factor regulates the expression of ccg-1 and cat-1 genes in response to fludioxonil under OS-2 MAP kinase in Neurospora crassa

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Timeline: Neurospora: a model of model microbes.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5604002

Recurrent turnover of senescent cells during regeneration of a complex structure

14 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1702591114

Meiotic transvection in fungi

21 January 2018

1 reference

12 December 2020

Meiotic silencing by unpaired DNA

1 reference

12 December 2020

Meiosis as a source of spontaneous mutations in Schizophyllum commune

1 reference

12 December 2020

SPT3 interacts with TFIID to allow normal transcription in Saccharomyces cerevisiae

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1702591114

1 reference

10 July 2018

release_gblwdwbwinentfjewnidpwfj24

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/gblwdwbwinentfjewnidpwfj24

24 November 2022

mapped directly with Wikidata item

PMC publication ID

5604002

1 reference

10 July 2018

PubMed publication ID

28847945

1 reference

10 July 2018