(Q48076464)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18007603%20AND%20SRC:MED&resulttype=core&format=json

26 December 2019

title

Probe selection for DNA microarrays using OligoWiz (English)

1 reference

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26 December 2019

1

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26 December 2019

author name string

Agnieszka S Juncker

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18007603%20AND%20SRC:MED&resulttype=core&format=json

26 December 2019

Henrik Bjørn Nielsen

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18007603%20AND%20SRC:MED&resulttype=core&format=json

26 December 2019

publication date

1 January 2007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18007603%20AND%20SRC:MED&resulttype=core&format=json

26 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18007603%20AND%20SRC:MED&resulttype=core&format=json

26 December 2019

volume

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18007603%20AND%20SRC:MED&resulttype=core&format=json

26 December 2019

issue

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18007603%20AND%20SRC:MED&resulttype=core&format=json

26 December 2019

page(s)

2677-2691

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18007603%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1038/nprot.2007.370

26 December 2019

exact match

0 references

cites work

Solving the riddle of the bright mismatches: labeling and effective binding in oligonucleotide arrays

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Improved Estimation of Secondary Structure in Ribonucleic Acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

A model of molecular interactions on short oligonucleotide microarrays

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

A Model-Based Background Adjustment for Oligonucleotide Expression Arrays

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Preprocessing of oligonucleotide array data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Improving comparability between microarray probe signals by thermodynamic intensity correction

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

A comparison of alternative 60-mer probe designs in an in-situ synthesized oligonucleotide microarray

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Replacing cRNA targets with cDNA reduces microarray cross-hybridization

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Probe selection for high-density oligonucleotide arrays

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Empirical establishment of oligonucleotide probe design criteria

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Accurately quantifying low-abundant targets amid similar sequences by revealing hidden correlations in oligonucleotide microarray data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Surface electrostatic effects in oligonucleotide microarrays: control and optimization of binding thermodynamics

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Expression profiling using cDNA microarrays

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

The stability of helical polynucleotides: base contributions.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

THEORY OF THE MELTING TRANSITION OF SYNTHETIC POLYNUCLEOTIDES: EVALUATION OF THE STACKING FREE ENERGY

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Stability of RNA hairpin loops: A6-Cm-U6

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Stability of ribonucleic acid double-stranded helices

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

OligoWiz 2.0--integrating sequence feature annotation into the design of microarray probes.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Thermodynamic basis of the enhanced specificity of structured DNA probes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Minimising the secondary structure of DNA targets by incorporation of a modified deoxynucleoside: implications for nucleic acid analysis by hybridisation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

On finding all suboptimal foldings of an RNA molecule

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Design of a seven-genome Escherichia coli microarray for comparative genomic profiling

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

New weakly expressed cell cycle-regulated genes in yeast.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Transcription analysis using high-density micro-arrays of Aspergillus nidulans wild-type and creA mutant during growth on glucose or ethanol

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

The long and winding road from the research laboratory to industrial applications of lactic acid bacteria.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

FeatureExtract--extraction of sequence annotation made easy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

OligoArray: genome-scale oligonucleotide design for microarrays

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Oligodb--interactive design of oligo DNA for transcription profiling of human genes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Selection of oligonucleotide probes for protein coding sequences

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Oliz, a suite of Perl scripts that assist in the design of microarrays using 50mer oligonucleotides from the 3' untranslated region

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

ROSO: optimizing oligonucleotide probes for microarrays

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

Picky: oligo microarray design for large genomes.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

YODA: selecting signature oligonucleotides

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.370

31 March 2020

Identifiers

DOI

10.1038/NPROT.2007.370

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18007603%20AND%20SRC:MED&resulttype=core&format=json

26 December 2019

1 reference