(Q48148936)

English

Transcriptomic profiling of Burkholderia phymatum STM815, Cupriavidus taiwanensis LMG19424 and Rhizobium mesoamericanum STM3625 in response to Mimosa pudica root exudates illuminates the molecular basis of their nodulation competitiveness and symbio

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Europe PubMed Central

PMC publication ID

20 February 2018

http://europepmc.org/abstract/PMC/5789663

Transcriptomic profiling of Burkholderia phymatum STM815, Cupriavidus taiwanensis LMG19424 and Rhizobium mesoamericanum STM3625 in response to Mimosa pudica root exudates illuminates the molecular basis of their nodulation competitiveness and symbio (English)

1 reference

Europe PubMed Central

PMC publication ID

20 February 2018

http://europepmc.org/abstract/PMC/5789663

0 references

1 reference

based on heuristic

inferred from title

Rhizobium mesoamericanum

object named as

Rhizobium mesoamericanum

1 reference

based on heuristic

inferred from title

object named as

Mimosa pudica

1 reference

based on heuristic

inferred from title

Cupriavidus taiwanensis

object named as

Cupriavidus taiwanensis

1 reference

based on heuristic

inferred from title

Burkholderia phymatum

object named as

Burkholderia phymatum

1 reference

based on heuristic

inferred from title

object named as

Lionel Moulin

5

0 references

author name string

Agnieszka Klonowska

1

1 reference

Europe PubMed Central

PMC publication ID

20 February 2018

http://europepmc.org/abstract/PMC/5789663

Rémy Melkonian

2

1 reference

Europe PubMed Central

PMC publication ID

20 February 2018

http://europepmc.org/abstract/PMC/5789663

Lucie Miché

3

1 reference

Europe PubMed Central

PMC publication ID

20 February 2018

http://europepmc.org/abstract/PMC/5789663

Pierre Tisseyre

4

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Europe PubMed Central

PMC publication ID

20 February 2018

http://europepmc.org/abstract/PMC/5789663

language of work or name

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publication date

30 January 2018

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Europe PubMed Central

PMC publication ID

20 February 2018

http://europepmc.org/abstract/PMC/5789663

1 reference

Europe PubMed Central

PMC publication ID

20 February 2018

http://europepmc.org/abstract/PMC/5789663

19

1 reference

Europe PubMed Central

PMC publication ID

20 February 2018

http://europepmc.org/abstract/PMC/5789663

1

1 reference

Europe PubMed Central

PMC publication ID

20 February 2018

http://europepmc.org/abstract/PMC/5789663

105

1 reference

Europe PubMed Central

PMC publication ID

20 February 2018

http://europepmc.org/abstract/PMC/5789663

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DESeq

1 reference

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PilX, a pilus-associated protein essential for bacterial aggregation, is a key to pilus-facilitated attachment of Neisseria meningitidis to human cells.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

A dual-genome Symbiosis Chip for coordinate study of signal exchange and development in a prokaryote-host interaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Expression of an exogenous 1-aminocyclopropane-1-carboxylate deaminase gene in Sinorhizobium meliloti increases its ability to nodulate alfalfa.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Structural flexibility in the Burkholderia mallei genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Protein measurement with the Folin phenol reagent

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Bradyrhizobium elkanii rtxC gene is required for expression of symbiotic phenotypes in the final step of rhizobitoxine biosynthesis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Legume symbiotic nitrogen fixation by beta-proteobacteria is widespread in nature

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Electron Ionization Mass Spectra and Their Reproducibility for Trialkylsilylated Derivatives of Organic Acids, Sugars and Alcohols

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

The bacterial translocase: a dynamic protein channel complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Surface polysaccharide involvement in establishing the rhizobium-legume symbiosis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Transcriptome analysis of Sinorhizobium meliloti during symbiosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Type IV pili and twitching motility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Chromosomal locus that affects pathogenicity of Rhodococcus fascians

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

What makes the rhizobia-legume symbiosis so special?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Nod genes and Nod signals and the evolution of the Rhizobium legume symbiosis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

DNA sequence and mutational analysis of rhizobitoxine biosynthesis genes in Bradyrhizobium elkanii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Ralstonia taiwanensis sp. nov., isolated from root nodules of Mimosa species and sputum of a cystic fibrosis patient

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Nodulation of legumes by members of the beta-subclass of Proteobacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Adaptation of Pseudomonas fluorescens to the plant rhizosphere

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Multiresistance genes of Rhizobium etli CFN42.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Genetic analysis of functions involved in adhesion of Pseudomonas putida to seeds.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Molecular basis of symbiotic promiscuity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Genes coding for phosphotransacetylase and acetate kinase in Sinorhizobium meliloti are in an operon that is inducible by phosphate stress and controlled by phoB.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Cloning and characterization of a CMCase gene, celB, of Erwinia carotovora subsp. carotovora LY34 and its comparison to celA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Rhizobium lipo-chitooligosaccharide nodulation factors: signaling molecules mediating recognition and morphogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Characterization of genes for synthesis and catabolism of a new rhizopine induced in nodules by Rhizobium meliloti Rm220-3: extension of the rhizopine concept

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Isoprenoid biosynthesis in bacteria: a novel pathway for the early steps leading to isopentenyl diphosphate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

The psi operon of Rhizobium leguminosarum biovar phaseoli: identification of two genes whose products are located at the bacterial cell surface

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Rhizobium leguminosarum has two glucosamine synthases, GlmS and NodM, required for nodulation and development of nitrogen-fixing nodules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

A Rhizobium meliloti lipopolysaccharide mutant altered in competitiveness for nodulation of alfalfa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

22 May 2018

Symbiotic Burkholderia Species Show Diverse Arrangements of nif/fix and nod Genes and Lack Typical High-Affinity Cytochrome cbb3 Oxidase Genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

Shaping bacterial symbiosis with legumes by experimental evolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

Genome characterization of a novel Burkholderia cepacia complex genomovar isolated from dieback affected mango orchards

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

Transcriptomic analysis of responses to exudates reveal genes required for rhizosphere competence of the endophyte Azoarcus sp. strain BH72.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

Glycerol utilization by Rhizobium leguminosarum requires an ABC transporter and affects competition for nodulation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

Development of functional symbiotic white clover root hairs and nodules requires tightly regulated production of rhizobial cellulase CelC2.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

Host-specific symbiotic requirement of BdeAB, a RegR-controlled RND-type efflux system in Bradyrhizobium japonicum.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

Atypical transcriptional regulation and role of a new toxin-antitoxin-like module and its effect on the lipid composition of Bradyrhizobium japonicum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

Cloning and functional expression of an MscL ortholog from Rhizobium etli: characterization of a mechanosensitive channel.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

Pathway of gamma-aminobutyrate metabolism in Rhizobium leguminosarum 3841 and its role in symbiosis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

Formation of a dinitrosyl iron complex by NorA, a nitric oxide-binding di-iron protein from Ralstonia eutropha H16.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

The role of a P1-type ATPase from Pseudomonas fluorescens SBW25 in copper homeostasis and plant colonization.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

Symbiosis-induced cascade regulation of the Mesorhizobium loti R7A VirB/D4 type IV secretion system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

Burkholderia phymatum is a highly effective nitrogen-fixing symbiont of Mimosa spp. and fixes nitrogen ex planta

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

Flavonoids, NodD1, NodD2, and nod-box NB15 modulate expression of the y4wEFG locus that is required for indole-3-acetic acid synthesis in Rhizobium sp. strain NGR234.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

Phylogenetic analyses of symbiotic nodulation genes support vertical and lateral gene co-transfer within the Bradyrhizobium genus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

Infection-blocking genes of a symbiotic Rhizobium leguminosarum strain that are involved in temperature-dependent protein secretion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

High-resolution transcriptional analysis of the symbiotic plasmid of Rhizobium sp. NGR234.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

A model for the catabolism of rhizopine in Rhizobium leguminosarum involves a ferredoxin oxygenase complex and the inositol degradative pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5789663

14 August 2018

Structural determination of bacterial nodulation factors involved in the Rhizobium meliloti-alfalfa symbiosis

1 reference

https://pubmed.ncbi.nlm.nih.gov/29378510

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The glutamine synthetases of rhizobia: phylogenetics and evolutionary implications

1 reference

https://pubmed.ncbi.nlm.nih.gov/29378510

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stimulation of adhesiveness, infectivity, and competitiveness for nodulation of Bradyrhizobium japonicum by its pretreatment with soybean seed lectin

1 reference

https://pubmed.ncbi.nlm.nih.gov/29378510

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional analysis of chimeras derived from the Sinorhizobium meliloti and Mesorhizobium loti nodC genes identifies regions controlling chitin oligosaccharide chain length

1 reference

https://pubmed.ncbi.nlm.nih.gov/29378510

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Rhizobium leguminosarum prsDE genes are required for secretion of several proteins, some of which influence nodulation, symbiotic nitrogen fixation and exopolysaccharide modification

1 reference

https://pubmed.ncbi.nlm.nih.gov/29378510

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of Motility and Chemotaxis in Efficiency of Nodulation by Rhizobium meliloti

1 reference

https://pubmed.ncbi.nlm.nih.gov/29378510

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The ntrPR operon of Sinorhizobium meliloti is organized and functions as a toxin-antitoxin module

1 reference

https://pubmed.ncbi.nlm.nih.gov/29378510

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of Nod-factor-induced calcium signaling in root hairs of symbiotically defective mutants of Lotus japonicus

1 reference

https://pubmed.ncbi.nlm.nih.gov/29378510

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic diversity of Mimosa pudica rhizobial symbionts in soils of French Guiana: investigating the origin and diversity of Burkholderia phymatum and other beta-rhizobia

1 reference

https://pubmed.ncbi.nlm.nih.gov/29378510

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Biosynthesis of branched-chain amino acids is essential for effective symbioses between betarhizobia and Mimosa pudica

1 reference

https://pubmed.ncbi.nlm.nih.gov/29378510

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S12864-018-4487-2

1 reference

Europe PubMed Central

PMC publication ID

20 February 2018

http://europepmc.org/abstract/PMC/5789663

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-018-4487-2

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

20 February 2018

http://europepmc.org/abstract/PMC/5789663

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

20 February 2018

http://europepmc.org/abstract/PMC/5789663

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