(Q48234132)

English

The mitochondrial genome of Chara vulgaris: insights into the mitochondrial DNA architecture of the last common ancestor of green algae and land plants.

scientific article published in August 2003

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scholarly article

1 reference

Europe PubMed Central

9 February 2018

http://europepmc.org/abstract/MED/12897260

The mitochondrial genome of Chara vulgaris: insights into the mitochondrial DNA architecture of the last common ancestor of green algae and land plants. (English)

1 reference

Europe PubMed Central

9 February 2018

http://europepmc.org/abstract/MED/12897260

mitochondrial DNA

0 references

1 reference

based on heuristic

inferred from title

object named as

Chara vulgaris

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

3

1 reference

Europe PubMed Central

9 February 2018

http://europepmc.org/abstract/MED/12897260

author name string

Monique Turmel

1

1 reference

Europe PubMed Central

9 February 2018

http://europepmc.org/abstract/MED/12897260

Christian Otis

2

1 reference

Europe PubMed Central

9 February 2018

http://europepmc.org/abstract/MED/12897260

publication date

1 August 2003

1 reference

Europe PubMed Central

9 February 2018

http://europepmc.org/abstract/MED/12897260

1 reference

Europe PubMed Central

9 February 2018

http://europepmc.org/abstract/MED/12897260

15

1 reference

Europe PubMed Central

9 February 2018

http://europepmc.org/abstract/MED/12897260

8

1 reference

Europe PubMed Central

9 February 2018

http://europepmc.org/abstract/MED/12897260

1888-1903

1 reference

Europe PubMed Central

9 February 2018

http://europepmc.org/abstract/MED/12897260

Among-site rate variation and its impact on phylogenetic analyses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

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The enigmatic mitochondrial ORF ymf39 codes for ATP synthase chain b

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

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The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants

1 reference

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2 November 2018

The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants

1 reference

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Punctuated evolution of mitochondrial gene content: high and variable rates of mitochondrial gene loss and transfer to the nucleus during angiosperm evolution

1 reference

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2 November 2018

Mosses share mitochondrial group II introns with flowering plants, not with liverworts.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

The complete mitochondrial DNA sequence of Mesostigma viride identifies this green alga as the earliest green plant divergence and predicts a highly compact mitochondrial genome in the ancestor of all green plants

1 reference

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2 November 2018

The closest living relatives of land plants

1 reference

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The ins and outs of group II introns

1 reference

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2 November 2018

Phylogenetic relationships among group II intron ORFs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

The mitochondrial nad2 gene as a novel marker locus for phylogenetic analysis of early land plants: a comparative analysis in mosses

1 reference

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T-Coffee: A novel method for fast and accurate multiple sequence alignment

1 reference

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2 November 2018

The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(Cys)(GCA)

1 reference

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Dynamic evolution of plant mitochondrial genomes: mobile genes and introns and highly variable mutation rates

1 reference

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1 reference

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2 November 2018

PipMaker--a web server for aligning two genomic DNA sequences

1 reference

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2 November 2018

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

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Mitochondrial Genome Evolution and the Origin of Eukaryotes

1 reference

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2 November 2018

Ancestral chloroplast genome in Mesostigma viride reveals an early branch of green plant evolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction

1 reference

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2 November 2018

RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

The mitochondrial genome of Arabidopsis is composed of both native and immigrant information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

Multiple acquisitions via horizontal transfer of a group I intron in the mitochondrial cox1 gene during evolution of the Araceae family.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: insights into the architecture of ancestral chloroplast genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

REPuter: fast computation of maximal repeats in complete genomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

Plant mitochondrial RNA editing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

MODELTEST: testing the model of DNA substitution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

Trans-splicing group II introns in plant mitochondria: the complete set of cis-arranged homologs in ferns, fern allies, and a hornwort

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

Explosive invasion of plant mitochondria by a group I intron

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

The gain of three mitochondrial introns identifies liverworts as the earliest land plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

Genome structure and gene content in protist mitochondrial DNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

PAML: a program package for phylogenetic analysis by maximum likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

Phylogenetic relationships of the liverworts (Hepaticae), a basal embryophyte lineage, inferred from nucleotide sequence data of the chloroplast gene rbcL.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

Evolution of trans-splicing plant mitochondrial introns in pre-Permian times

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

The reverse-transcriptase-like proteins encoded by group II introns in the mitochondrial genome of the brown alga Pylaiella littoralis belong to two different lineages which apparently coevolved with the group II ribosyme lineages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

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Universality of mitochondrial RNA editing in cytochrome-c oxidase subunit I (coxI) among the land plants

1 reference

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RNA editing in bryophytes and a molecular phylogeny of land plants

1 reference

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Introns as mobile genetic elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

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Evidence for RNA editing in mitochondria of all major groups of land plants except the Bryophyta

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

2 November 2018

Complete sequence of the mitochondrial DNA of the chlorophyte alga Prototheca wickerhamii. Gene content and genome organization

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

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Group I introns in the liverwort mitochondrial genome: the gene coding for subunit 1 of cytochrome oxidase shares five intron positions with its fungal counterparts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167177

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The site-specific DNA endonuclease encoded by a group I intron in the Chlamydomonas pallidostigmatica chloroplast small subunit rRNA gene introduces a single-strand break at low concentrations of Mg2+

1 reference

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Chloroplast-like transfer RNA genes expressed in wheat mitochondria.

1 reference

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Reverse self-splicing of the tetrahymena group I intron: implication for the directionality of splicing and for intron transposition

1 reference

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1 reference

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The general stochastic model of nucleotide substitution

1 reference

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Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

1 reference

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Basic local alignment search tool

1 reference

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Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome.

1 reference

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Transfer RNA genes in the mitochondrial genome from a liverwort, Marchantia polymorpha: the absence of chloroplast-like tRNAs

1 reference

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Divergent intron conservation in the mitochondrial nad2 gene: signatures for the three bryophyte classes (mosses, liverworts, and hornworts) and the lycophytes

1 reference

https://pubmed.ncbi.nlm.nih.gov/12897260

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1105/TPC.013169

1 reference

Europe PubMed Central

9 February 2018

http://europepmc.org/abstract/MED/12897260

0 references

1 reference

Europe PubMed Central

9 February 2018

http://europepmc.org/abstract/MED/12897260

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