(Q48507116)

12 February 2018

title

Improved prediction of protein-protein binding sites using a support vector machines approach (English)

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12 February 2018

main subject

support vector machine

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1

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12 February 2018

David R. Westhead

series ordinal

2

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12 February 2018

language of work or name

English

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publication date

21 December 2004

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12 February 2018

published in

Bioinformatics

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12 February 2018

volume

21

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12 February 2018

issue

8

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12 February 2018

page(s)

1487-1494

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12 February 2018

describes a project that uses

support vector machine

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based on heuristic

inferred from title

cites work

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Asymmetric mutation rates at enzyme-inhibitor interfaces: implications for the protein-protein docking problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Knowledge-based analysis of microarray gene expression data by using support vector machines

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Principles of protein-protein recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Analytical molecular surface calculation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Multi-class protein fold recognition using support vector machines and neural networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Distinguishing enzyme structures from non-enzymes without alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Shape analysis of molecular surfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Prediction of protein--protein interaction sites in heterocomplexes with neural networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

X-ray structure of calcineurin inhibited by the immunophilin-immunosuppressant FKBP12-FK506 complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

A novel method of protein secondary structure prediction with high segment overlap measure: support vector machine approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Crystal structure of the cytoplasmic domain of the type I TGF beta receptor in complex with FKBP12

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Principles of protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Analysis of protein-protein interaction sites using surface patches

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Prediction of protein-protein interaction sites using patch analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Pattern recognition strategies for molecular surfaces: III. Binding site prediction with a neural network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Protein secondary structure prediction based on an improved support vector machines approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Prediction of protein-protein interaction sites using support vector machines

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

A comparative study of machine-learning methods to predict the effects of single nucleotide polymorphisms on protein function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

The atomic structure of protein-protein recognition sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

ProMate: a structure based prediction program to identify the location of protein-protein binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Diversity of protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Structural characterisation and functional significance of transient protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Dictionary of interfaces in proteins (DIP). Data bank of complementary molecular surface patches.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Crystal structure of constitutive endothelial nitric oxide synthase: a paradigm for pterin function involving a novel metal center

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Structure of Type IIβ Phosphatidylinositol Phosphate Kinase

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Structure at 1.65 A of RhoA and its GTPase-activating protein in complex with a transition-state analogue

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Rapid grid-based construction of the molecular surface and the use of induced surface charge to calculate reaction field energies: applications to the molecular systems and geometric objects

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Beta edge strands in protein structure prediction and aggregation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Substrate-induced closure of the flap domain in the ternary complex structures provides insights into the mechanism of catalysis by 3-hydroxy-3-methylglutaryl-CoA reductase

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

A dataset of protein-protein interfaces generated with a sequence-order-independent comparison technique

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Scoring residue conservation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Crystal structure of brefeldin A esterase, a bacterial homolog of the mammalian hormone-sensitive lipase

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Haem-ligand switching during catalysis in crystals of a nitrogen-cycle enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

A two-stage classifier for identification of protein-protein interface residues

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

A role for surface hydrophobicity in protein-protein recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Prediction of protein solvent accessibility using support vector machines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Support vector machines with selective kernel scaling for protein classification and identification of key amino acid positions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Classification of protein quaternary structure with support vector machine

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Application of support vector machines for T-cell epitopes prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Prediction of protein interaction sites from sequence profile and residue neighbor list.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Prediction of protein secondary structure and active sites using the alignment of homologous sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

Principles of docking: An overview of search algorithms and a guide to scoring functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTI242

10.1093/BIOINFORMATICS/BTI242

21 January 2018

Identifiers

DOI

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12 February 2018

journals/bioinformatics/BradfordW05

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

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12 February 2018