(Q48626546)

13 February 2018

title

ITS1 versus ITS2 as DNA metabarcodes for fungi. (English)

1 reference

13 February 2018

0 references

3

1 reference

13 February 2018

Kessy Abarenkov

4

1 reference

13 February 2018

Surendra Kumar

object named as

S Kumar

2

0 references

Håvard Kauserud

6

object named as

H Kauserud

1 reference

13 February 2018

R Blaalid

1

1 reference

13 February 2018

P M Kirk

5

1 reference

13 February 2018

language of work or name

English

0 references

publication date

25 January 2013

1 reference

13 February 2018

Molecular Ecology Resources

published in

1 reference

13 February 2018

volume

13

1 reference

13 February 2018

page(s)

218-224

1 reference

13 February 2018

issue

2

1 reference

13 February 2018

The UNITE database for molecular identification of fungi--recent updates and future perspectives.

cites work

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Multiple markers pyrosequencing reveals highly diverse and host-specific fungal communities on the mangrove trees Avicennia marina and Rhizophora stylosa

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Sequence-based identification of Aspergillus, fusarium, and mucorales species in the clinical mycology laboratory: where are we and where should we go from here?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Barcoded primers used in multiplex amplicon pyrosequencing bias amplification

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

High diversity of root associated fungi in both alpine and arctic Dryas octopetala

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Seasonal trends in the biomass and structure of bryophyte-associated fungal communities explored by 454 pyrosequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Search and clustering orders of magnitude faster than BLAST

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

ITS primers with enhanced specificity for basidiomycetes--application to the identification of mycorrhizae and rusts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Species delimitation in fungal endophyte diversity studies and its implications in ecological and biogeographic inferences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Quantitative assessment of the human gut microbiome using multitag pyrosequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Soil fungal communities underneath willow canopies on a primary successional glacier forefront: rDNA sequence results can be affected by primer selection and chimeric data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

The International Nucleotide Sequence Database Collaboration

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

High consistency between replicate 454 pyrosequencing analyses of ectomycorrhizal plant root samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

The Sequence Read Archive: explosive growth of sequencing data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

CLOTU: an online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

High phylogenetic diversity among corticioid homobasidiomycetes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

ITS-1 versus ITS-2 pyrosequencing: a comparison of fungal populations in truffle grounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Perspectives in the new Russulales

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Contrasting ectomycorrhizal fungal communities on the roots of co-occurring oaks (Quercus spp.) in a California woodland.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Evolution of rDNA ITS1 and ITS2 sequences and RNA secondary structures within members of the fungal genera Grosmannia and Leptographium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

The ITS region as a target for characterization of fungal communities using emerging sequencing technologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Fungal community analysis by large-scale sequencing of environmental samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

RAMI: a tool for identification and characterization of phylogenetic clusters in microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Accurate determination of microbial diversity from 454 pyrosequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Seasonal dynamics of ectomycorrhizal fungus assemblages on oak seedlings in the southeastern Appalachian Mountains

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Production of ectomycorrhizal mycelium peaks during canopy closure in Norway spruce forests

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Two decades of describing the unseen majority of aquatic microbial diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12065

21 January 2018

Identifiers

DOI

10.1111/1755-0998.12065

1 reference

13 February 2018

PubMed ID

23350562

1 reference

13 February 2018