(Q48698153)

14 February 2018

title

Genome-wide analysis of substrate specificities of the Escherichia coli haloacid dehalogenase-like phosphatase family. (English)

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14 February 2018

9-{5-O-[Hydroxy(phosphonooxy)phosphoryl]pentofuranosyl}-3,9-dihydro-6H-purin-6-one

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4-Amino-1-[2-deoxy-5-O-(hydroxy{[hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl)pentofuranosyl]pyrimidin-2(1H)-one

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deoxyadenosine 5'-monophosphate

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4-nitrophenyl phosphate

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(2R,3S,4R,5R)-2-(4-amino-2-oxopyrimidin-1(2H)-yl)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-3-yl dihydrogen phosphate

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S-[2-[3-[[(2R)-4-[[[(2R,3R,4S,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] hexadecanethioate

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sucrose 6-phosphate (P on 6-ring)

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alpha-D-galactose-1-phosphate

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N(omega)-phospho-L-arginine

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6-phospho-D-gluconic acid

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Cytidine 5'-(dihydrogen phosphate)

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deoxycytidine dihydrogen phosphate

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2-deoxy-D-ribose 5-phosphate

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2-deoxy-D-glucose 6-phosphate

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imidodiphosphoric acid

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2'-deoxyinosine-5'-monophosphate

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O-Phospho-DL-threonine

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phosphocholine cation

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2-phosphoglycolic acid

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alpha-D-talo-Hexopyranose-1-phosphoric acid

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13

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14 February 2018

Alexander F. Yakunin

14

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14 February 2018

Cheryl Arrowsmith

Cheryl H Arrowsmith

11

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Eugene Koonin

12

Eugene V Koonin

1 reference

14 February 2018

8

Yuri I Wolf

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14 February 2018

5

Marina V Omelchenko

1 reference

14 February 2018

Liran Carmel

7

Liran Carmel

1 reference

14 February 2018

Ekaterina Kuznetsova

1

Ekaterina Kuznetsova

1 reference

14 February 2018

Hirotada Mori

9

Hirotada Mori

1 reference

14 February 2018

Michael Proudfoot

2

Michael Proudfoot

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14 February 2018

author name string

Claudio F Gonzalez

3

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14 February 2018

Greg Brown

4

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14 February 2018

Ivan Borozan

6

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14 February 2018

Alexei V Savchenko

10

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14 February 2018

language of work or name

English

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publication date

21 September 2006

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14 February 2018

Journal of Biological Chemistry

published in

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14 February 2018

volume

281

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14 February 2018

issue

47

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14 February 2018

page(s)

36149-36161

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14 February 2018

EcoCyc: a comprehensive database resource for Escherichia coli

cites work

1 reference

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A structure-based anatomy of the E.coli metabolome

21 January 2018

1 reference

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Computer analysis of bacterial haloacid dehalogenases defines a large superfamily of hydrolases with diverse specificity. Application of an iterative approach to database search

21 January 2018

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Phosphoryl group transfer: evolution of a catalytic scaffold

21 January 2018

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Crystal structure of phosphoserine phosphatase from Methanococcus jannaschii, a hyperthermophile, at 1.8 A resolution

21 January 2018

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Structure- and function-based characterization of a new phosphoglycolate phosphatase from Thermoplasma acidophilum

21 January 2018

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The crystal structure of bacillus cereus phosphonoacetaldehyde hydrolase: insight into catalysis of phosphorus bond cleavage and catalytic diversification within the HAD enzyme superfamily

21 January 2018

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Crystal structure of L-2-haloacid dehalogenase from Pseudomonas sp. YL. An alpha/beta hydrolase structure that is different from the alpha/beta hydrolase fold

21 January 2018

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Three-dimensional structure of L-2-haloacid dehalogenase from Xanthobacter autotrophicus GJ10 complexed with the substrate-analogue formate

21 January 2018

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YbiV from Escherichia coli K12 is a HAD phosphatase

21 January 2018

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Structure and activity analyses of Escherichia coli K-12 NagD provide insight into the evolution of biochemical function in the haloalkanoic acid dehalogenase superfamily

21 January 2018

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Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655

21 January 2018

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Role of 2-phosphoglycolate phosphatase of Escherichia coli in metabolism of the 2-phosphoglycolate formed in DNA repair

21 January 2018

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Escherichia coli YrbI is 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase.

21 January 2018

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Trehalose metabolism in Escherichia coli: stress protection and stress regulation of gene expression

21 January 2018

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Structure of Thermotoga maritima stationary phase survival protein SurE: a novel acid phosphatase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Comprehensive site-directed mutagenesis of L-2-halo acid dehalogenase to probe catalytic amino acid residues.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

A malachite green procedure for orthophosphate determination and its use in alkaline phosphatase-based enzyme immunoassay.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Catalytic cycling in beta-phosphoglucomutase: a kinetic and structural analysis

21 January 2018

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One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

21 January 2018

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Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter

21 January 2018

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Ligand selectivity and competition between enzymes in silico.

21 January 2018

1 reference

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Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

MRBAYES: Bayesian inference of phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Enzyme recruitment in evolution of new function

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Enzymes with extra talents: moonlighting functions and catalytic promiscuity

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Catalytic promiscuity in biocatalysis: using old enzymes to form new bonds and follow new pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

On the origin of enzymatic species

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Divergent evolution of enzymatic function: mechanistically diverse superfamilies and functionally distinct suprafamilies

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Catalysing new reactions during evolution: economy of residues and mechanism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Shared promiscuous activities and evolutionary features in various members of the amidohydrolase superfamily.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Function of the duplicated IIB domain and oligomeric structure of the fructose permease of Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

General enzymatic screens identify three new nucleotidases in Escherichia coli. Biochemical characterization of SurE, YfbR, and YjjG.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Mammalian 5'-nucleotidases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Human pyridoxal phosphatase. Molecular cloning, functional expression, and tissue distribution

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Isolation and characterization of the phosphoglucose isomerase gene from Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Purification and characterization of glpX-encoded fructose 1, 6-bisphosphatase, a new enzyme of the glycerol 3-phosphate regulon of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Quantification of intracellular metabolites in Escherichia coli K12 using liquid chromatographic-electrospray ionization tandem mass spectrometric techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Acid phosphatases of Escherichia coli: molecular cloning and analysis of agp, the structural gene for a periplasmic acid glucose phosphatase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Single-run separation and detection of multiple metabolic intermediates by anion-exchange high-performance liquid chromatography and application to cell pool extracts prepared from Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Metabolomics: quantification of intracellular metabolite dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Trehalose-6-phosphate hydrolase of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

BeF(3)(-) acts as a phosphate analog in proteins phosphorylated on aspartate: structure of a BeF(3)(-) complex with phosphoserine phosphatase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Phosphorylation of bacterial response regulator proteins by low molecular weight phospho-donors

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

31P NMR and genetic analysis establish hinT as the only Escherchia coli purine nucleoside phosphoramidase and as essential for growth under high salt conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Trends in protein evolution inferred from sequence and structure analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Analysing gene function after duplication

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Chronophin, a novel HAD-type serine protein phosphatase, regulates cofilin-dependent actin dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Biosynthesis pathway of ADP-L-glycero-beta-D-manno-heptose in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Trehalose synthesis is induced upon exposure of Escherichia coli to cold and is essential for viability at low temperatures

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Magnesium-dependent phosphatase-1 is a protein-fructosamine-6-phosphatase potentially involved in glycation repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Evidence for non-enzymatic glycosylation in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Evidence for non-enzymatic glycosylation of Escherichia coli chromosomal DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

Enzyme genomics: Application of general enzymatic screens to discover new enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M605449200

21 January 2018

Identifiers

DOI

10.1074/JBC.M605449200

1 reference

14 February 2018

PubMed ID

16990279

1 reference

14 February 2018