(Q49022064)

17 February 2018

title

Analysis of the binding of Xenopus transcription factor IIIA to oocyte 5 S rRNA and to the 5 S rRNA gene. (English)

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17 February 2018

author name string

S L Rawlings

series ordinal

1

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17 February 2018

G D Matt

series ordinal

2

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17 February 2018

P W Huber

series ordinal

3

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17 February 2018

language of work or name

English

0 references

publication date

1 January 1996

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17 February 2018

Journal of Biological Chemistry

number of pages

10

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based on heuristic

inferred from page(s)

published in

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17 February 2018

volume

271

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17 February 2018

issue

2

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17 February 2018

page(s)

868-877

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17 February 2018

Specific interaction of a purified transcription factor with an internal control region of 5S RNA genes

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Isolation of a 7S particle from Xenopus laevis oocytes: a 5S RNA-protein complex

21 January 2018

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A specific transcription factor that can bind either the 5S RNA gene or 5S RNA

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Role of TFIIIA zinc fingers in vivo: analysis of single-finger function in developing Xenopus embryos

21 January 2018

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Identification of the binding site on 5S rRNA for the transcription factor IIIA: proposed structure of a common binding site on 5S rRNA and on the gene

21 January 2018

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Specific interaction of the first three zinc fingers of TFIIIA with the internal control region of the Xenopus 5 S RNA gene.

21 January 2018

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Dissection of the DNA-binding domain of Xenopus laevis TFIIIA. Quantitative DNase I footprinting analysis of specific complexes between a 5 S RNA gene fragment and N-terminal fragments of TFIIIA containing three, four or five zinc-finger domains

21 January 2018

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RNA and DNA binding zinc fingers in Xenopus TFIIIA.

21 January 2018

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The function of individual zinc fingers in sequence-specific DNA recognition by transcription factor IIIA.

21 January 2018

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Differential binding of zinc fingers from Xenopus TFIIIA and p43 to 5S RNA and the 5S RNA gene

21 January 2018

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Definition of the binding sites of individual zinc fingers in the transcription factor IIIA-5S RNA gene complex

21 January 2018

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Locations of contacts between individual zinc fingers of Xenopus laevis transcription factor IIIA and the internal control region of a 5S RNA gene.

21 January 2018

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A new approach to the analysis of DNase I footprinting data and its application to the TFIIIA/5S DNA complex.

21 January 2018

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Molecular basis for specific recognition of both RNA and DNA by a zinc finger protein.

21 January 2018

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The 5S gene internal control region is composed of three distinct sequence elements, organized as two functional domains with variable spacing

21 January 2018

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Transition mutations within the Xenopus borealis somatic 5S RNA gene can have independent effects on transcription and TFIIIA binding

21 January 2018

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TFIIIA binds to different domains of 5S RNA and the Xenopus borealis 5S RNA gene

21 January 2018

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Involvement of "hinge" nucleotides of Xenopus laevis 5 S rRNA in the RNA structural organization and in the binding of transcription factor TFIIIA.

21 January 2018

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A difference in the importance of bulged nucleotides and their parent base pairs in the binding of transcription factor IIIA to Xenopus 5S RNA and 5S RNA genes

21 January 2018

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The effects of disrupting 5S RNA helical structures on the binding of Xenopus transcription factor IIIA.

21 January 2018

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Mutations in 5S DNA and 5S RNA have different effects on the binding of Xenopus transcription factor IIIA.

21 January 2018

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Ribosomal 5S RNA from Xenopus laevis oocytes: conformation and interaction with transcription factor IIIA.

21 January 2018

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The conformation of loop E of eukaryotic 5S ribosomal RNA.

21 January 2018

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Cooperative model for the binding of Xenopus transcription factor A to the 5S RNA gene

21 January 2018

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Purification of Xenopus transcription factor IIIA and 5 S RNA from 7 S ribonucleoprotein particle by ammonium sulfate precipitation

21 January 2018

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Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

21 January 2018

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Nuclease protection analysis of ribonucleoprotein complexes: use of the cytotoxic ribonuclease alpha-sarcin to determine the binding sites for Escherichia coli ribosomal proteins L5, L18, and L25 on 5S rRNA

21 January 2018

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Rapid and efficient site-specific mutagenesis without phenotypic selection

21 January 2018

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A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

21 January 2018

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A rapid boiling method for the preparation of bacterial plasmids

21 January 2018

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57 Sequencing end-labeled DNA with base-specific chemical cleavages

21 January 2018

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EZ-FIT: a practical curve-fitting microcomputer program for the analysis of enzyme kinetic data on IBM-PC compatible computers

21 January 2018

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41 LIGAND: A computerized analysis of ligand binding data

21 January 2018

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Characterization of the RNA binding properties of transcription factor IIIA of Xenopus laevis oocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

The carboxyterminal zinc fingers of TFIIIA interact with the tip of helix V of 5S RNA in the 7S ribonucleoprotein particle

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

TFIIIA binds with equal affinity to somatic and major oocyte 5S RNA genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

A comparison of the solution structures and conformational properties of the somatic and oocyte 5S rRNAs ofXenopus laevis

21 January 2018

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Delineation of structural domains in eukaryotic 5S rRNA with a rhodium probe

21 January 2018

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Structural Features that Give Rise to the Unusual Stability of RNA Hairpins Containing GNRA Loops

21 January 2018

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The conformation of the sarcin/ricin loop from 28S ribosomal RNA

21 January 2018

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Binding of TFIIIA to derivatives of 5S RNA containing sequence substitutions or deletions defines a minimal TFIIIA binding site

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.271.2.869

Sequence-specific binding of the N-terminal three-finger fragment of Xenopus transcription factor IIIA to the internal control region of a 5S RNA gene

21 January 2018

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Ultraviolet light-induced crosslinking reveals a unique region of local tertiary structure in potato spindle tuber viroid and HeLa 5S RNA.

21 January 2018

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Interaction of the RNA binding fingers of Xenopus transcription factor IIIA with specific regions of 5 S ribosomal RNA

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.271.2.869

Solution conformation of an RNA hairpin loop

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.271.2.869

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

21 January 2018

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Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers

21 January 2018

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The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc-finger/DNA recognition

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.271.2.869

Distinctive DNA conformation with enlarged major groove is found in Zn-finger-DNA and other protein-DNA complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

Structural polymorphism in the major groove of a 5S RNA gene complements the zinc finger domains of transcription factor IIIA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

Computer modeling from solution data of spinach chloroplast and of Xenopus laevis somatic and oocyte 5 S rRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

Mapping functional regions of transcription factor TFIIIA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

Electron microscopy reveals that transcription factor TFIIIA bends 5S DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

Transcription factor IIIA induced bending of the Xenopus somatic 5S gene promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

Zinc Finger Domains: Hypotheses and Current Knowledge

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

Structure refined to 2Å of a nicked DNA octanucleotide complex with DNase I

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

Domains of the positive transcription factor specific for the Xenopus 5S RNA gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

Relative Contributions of the Zinc Fingers of Transcription Factor IIIA to the Energetics of DNA Binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

Structure of the TFIIIA-5 S DNA complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

The role of highly conserved single-stranded nucleotides of Xenopus 5S RNA in the binding of transcription factor IIIA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

Contribution of individual base pairs to the interaction of TFIIIA with the Xenopus 5S RNA gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

A rapid fluorometric method for the estimation of DNA in cultured cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

Isolation and characterization of a 7 S RNP particle from mature Xenopus laevis oocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

Contact points between a positive transcription factor and the Xenopus 5S RNA gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

Major groove accessibility of RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

DNA structural variations in the E. coli tyrT promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

An underlying repeat in some transcriptional control sequences corresponding to half a double helical turn of DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.271.2.869

21 January 2018

Identifiers

DOI

10.1074/JBC.271.2.869

1 reference

17 February 2018

PubMed ID

8557698

1 reference

17 February 2018