(Q50422359)

English

Machine learning integration of rheumatoid arthritis synovial histology and RNAseq data identifies three disease subtypes.

scientific article published on 22 February 2018

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scholarly article

1 reference

Europe PubMed Central

13 March 2018

http://europepmc.org/abstract/MED/29468833

Identification of Three Rheumatoid Arthritis Disease Subtypes by Machine Learning Integration of Synovial Histologic Features and RNA Sequencing Data (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6336443&resulttype=core&format=json

13 May 2020

machine learning

0 references

1 reference

based on heuristic

inferred from title

rheumatoid arthritis

1 reference

based on heuristic

inferred from title

1

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6336443&resulttype=core&format=json

13 May 2020

Kathleen M Andersen

9

1 reference

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13 May 2020

15

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6336443&resulttype=core&format=json

13 May 2020

Robert B. Darnell

16

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13 May 2020

22

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13 May 2020

Vivian P Bykerk

21

object named as

Vivian P Bykerk

1 reference

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13 May 2020

Ellen M Gravallese

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object named as

Ellen Gravallese

1 reference

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13 May 2020

author name string

Phaedra Agius

2

1 reference

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13 May 2020

Edward F DiCarlo

3

1 reference

Europe PubMed Central

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13 May 2020

Nicolas Robine

4

1 reference

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13 May 2020

Heather Geiger

5

1 reference

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13 May 2020

Jackie Szymonifka

6

1 reference

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13 May 2020

Michael McNamara

7

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6336443&resulttype=core&format=json

13 May 2020

Ryan Cummings

8

1 reference

Europe PubMed Central

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13 May 2020

Serene Mirza

10

1 reference

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13 May 2020

Mark Figgie

11

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6336443&resulttype=core&format=json

13 May 2020

Alessandra B Pernis

13

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6336443&resulttype=core&format=json

13 May 2020

Nithya Lingampali

17

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6336443&resulttype=core&format=json

13 May 2020

Lionel B Ivashkiv

12

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6336443&resulttype=core&format=json

13 May 2020

Caroline S Jiang

14

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6336443&resulttype=core&format=json

13 May 2020

William H Robinson

18

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6336443&resulttype=core&format=json

13 May 2020

Accelerating Medicines Partnership in Rheumatoid Arthritis and Lupus Network

20

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6336443&resulttype=core&format=json

13 May 2020

Laura T Donlin

23

1 reference

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13 May 2020

publication date

22 February 2018

1 reference

Europe PubMed Central

13 March 2018

http://europepmc.org/abstract/MED/29468833

Arthritis & Rheumatology

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6336443&resulttype=core&format=json

13 May 2020

70

1 reference

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6336443&resulttype=core&format=json

13 May 2020

690-701

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6336443&resulttype=core&format=json

13 May 2020

5

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6336443&resulttype=core&format=json

13 May 2020

describes a project that uses

machine learning

1 reference

based on heuristic

inferred from title

The synovial membrane in osteoarthritis: a histological study including the characterisation of the cellular infiltrate present in inflammatory osteoarthritis using monoclonal antibodies

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The american rheumatism association 1987 revised criteria for the classification of rheumatoid arthritis

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Features of synovial membrane identified with monoclonal antibodies

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synovial plasma cells in rheumatoid arthritis. Electron microscope and immunofluorescence studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interrelationships between fibrin, neutrophils and rheumatoid synovitis

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Binucleated and multinucleated forms of plasma cells in synovia from patients with rheumatoid arthritis

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular cloning and expression of a novel beta-1, 6-N-acetylglucosaminyltransferase that forms core 2, core 4, and I branches

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alpha1-adrenoceptors involvement in painful diabetic neuropathy: a role in allodynia

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Production of neuropeptide substance P by synovial fibroblasts from patients with rheumatoid arthritis and osteoarthritis

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Microarchitecture and protective mechanisms in synovial tissue from clinically and arthroscopically normal knee joints

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DAVID: Database for Annotation, Visualization, and Integrated Discovery

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

[Low-grade-/high-grade-synovitis: synovitis-score as a gold standard?]

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Elevated high-sensitivity C-reactive protein levels are associated with local inflammatory findings in patients with osteoarthritis

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Capturing heterogeneity in gene expression studies by surrogate variable analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression of mucin 3 and mucin 5AC in arthritic synovial tissue

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Postsynaptic and differential localization to neuronal subtypes of protocadherin beta16 in the mammalian central nervous system

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synovial lymphoid neogenesis does not define a specific clinical rheumatoid arthritis phenotype

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Acetylcholine regulation of synoviocyte cytokine expression by the alpha7 nicotinic receptor

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The relationship between synovial lymphocyte aggregates and the clinical response to infliximab in rheumatoid arthritis: a prospective study

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synovial tissue heterogeneity in rheumatoid arthritis in relation to disease activity and biomarkers in peripheral blood

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

[Histopathological degeneration score of fibrous cartilage. Low- and high-grade meniscal degeneration].

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Quantitative determination of the diagnostic accuracy of the synovitis score and its components

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

2010 Rheumatoid arthritis classification criteria: An American College of Rheumatology/European League Against Rheumatism collaborative initiative

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Established rheumatoid arthritis: rationale for best practice: physicians' perspective of how to realise tight control in clinical practice

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of a cis-acting element that localizes mRNA to synapses

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Autoantibody epitope spreading in the pre-clinical phase predicts progression to rheumatoid arthritis

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pretreatment synovial transcriptional profile is associated with early and late clinical response in rheumatoid arthritis patients treated with rituximab

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distribution of protocadherin 9 protein in the developing mouse nervous system

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interrater reliability: the kappa statistic.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

STAR: ultrafast universal RNA-seq aligner

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Coupling of NF-protocadherin signaling to axon guidance by cue-induced translation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

New learnings on the pathophysiology of RA from synovial biopsies.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Increased expression of cutaneous α1-adrenoceptors after chronic constriction injury in rats.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Upregulation of α1-adrenoceptors on cutaneous nerve fibres after partial sciatic nerve ligation and in complex regional pain syndrome type II.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synovial phenotypes in rheumatoid arthritis correlate with response to biologic therapeutics.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of multinucleated giant cells in synovium and subchondral bone in knee osteoarthritis and rheumatoid arthritis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Higher expression of TNFα-induced genes in the synovium of patients with early rheumatoid arthritis correlates with disease activity, and predicts absence of response to first line therapy

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distinct and Cooperative Functions for the Protocadherin-α, -β and -γ Clusters in Neuronal Survival and Axon Targeting

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pathologically expanded peripheral T helper cell subset drives B cells in rheumatoid arthritis

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

EULAR recommendations for the management of rheumatoid arthritis with synthetic and biological disease-modifying antirheumatic drugs: 2016 update

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Single-cell RNA-seq of rheumatoid arthritis synovial tissue using low-cost microfluidic instrumentation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functionally distinct disease-associated fibroblast subsets in rheumatoid arthritis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29468833

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1002/ART.40428

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6336443&resulttype=core&format=json

13 May 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6336443&resulttype=core&format=json

13 May 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6336443&resulttype=core&format=json

13 May 2020

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