(Q50528544)

14 March 2018

title

Genome-wide binding site analysis of FAR-RED ELONGATED HYPOCOTYL3 reveals its novel function in Arabidopsis development. (English)

1 reference

14 March 2018

author name string

Xinhao Ouyang

1

1 reference

14 March 2018

Jigang Li

2

1 reference

14 March 2018

Gang Li

3

1 reference

14 March 2018

Bosheng Li

4

1 reference

14 March 2018

Beibei Chen

5

1 reference

14 March 2018

Huaishun Shen

6

1 reference

14 March 2018

Xi Huang

7

1 reference

14 March 2018

Xiaorong Mo

8

1 reference

14 March 2018

Xiangyuan Wan

9

1 reference

14 March 2018

Rongcheng Lin

10

1 reference

14 March 2018

Shigui Li

11

1 reference

14 March 2018

Haiyang Wang

12

1 reference

14 March 2018

Xing Wang Deng

13

1 reference

14 March 2018

publication date

29 July 2011

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14 March 2018

published in

The Plant Cell

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14 March 2018

volume

23

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14 March 2018

issue

7

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14 March 2018

page(s)

2514-2535

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14 March 2018

Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis.

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Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and post-transcriptional regulation

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Arabidopsis transcription factor ELONGATED HYPOCOTYL5 plays a role in the feedback regulation of phytochrome A signaling

25 August 2018

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Integration of brassinosteroid signal transduction with the transcription network for plant growth regulation in Arabidopsis

25 August 2018

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The Arabidopsis chloroplast division protein DYNAMIN-RELATED PROTEIN5B also mediates peroxisome division

25 August 2018

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Global identification of targets of the Arabidopsis MADS domain protein AGAMOUS-Like15.

25 August 2018

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25 August 2018

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25 August 2018

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Phytochromes promote seedling light responses by inhibiting four negatively-acting phytochrome-interacting factors

25 August 2018

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Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize.

25 August 2018

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A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock

25 August 2018

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Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis

25 August 2018

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Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

25 August 2018

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Model-based analysis of ChIP-Seq (MACS)

25 August 2018

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Effects of arc3, arc5 and arc6 mutations on plastid morphology and stromule formation in green and nongreen tissues of Arabidopsis thaliana.

25 August 2018

1 reference

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Arabidopsis COP1/SPA1 complex and FHY1/FHY3 associate with distinct phosphorylated forms of phytochrome A in balancing light signaling.

25 August 2018

1 reference

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Discrete and essential roles of the multiple domains of Arabidopsis FHY3 in mediating phytochrome A signal transduction.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Mapping short DNA sequencing reads and calling variants using mapping quality scores

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

A molecular framework for light and gibberellin control of cell elongation

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Coordinated regulation of Arabidopsis thaliana development by light and gibberellins.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

DNA transposons and the evolution of eukaryotic genomes

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Transposase-derived transcription factors regulate light signaling in Arabidopsis

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

PIL5, a phytochrome-interacting bHLH protein, regulates gibberellin responsiveness by binding directly to the GAI and RGA promoters in Arabidopsis seeds

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Novel receptor-like kinase ALE2 controls shoot development by specifying epidermis in Arabidopsis.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

PIF3 regulates anthocyanin biosynthesis in an HY5-dependent manner with both factors directly binding anthocyanin biosynthetic gene promoters in Arabidopsis.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Arabidopsis FHY3 specifically gates phytochrome signaling to the circadian clock.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

FHY1 and FHL act together to mediate nuclear accumulation of the phytochrome A photoreceptor.

25 August 2018

1 reference

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25 August 2018

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25 August 2018

1 reference

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Centromere locations and associated chromosome rearrangements in Arabidopsis lyrata and A. thaliana

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Nuclear accumulation of the phytochrome A photoreceptor requires FHY1.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Arabidopsis FHY1 protein stability is regulated by light via phytochrome A and 26S proteasome.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

FHL is required for full phytochrome A signaling and shares overlapping functions with FHY1.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Genome wide analysis of Arabidopsis core promoters

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Structure and genomic organization of centromeric repeats in Arabidopsis species.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Jittery, a Mutator distant relative with a paradoxical mobile behavior: excision without reinsertion

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

DNA and proteins of plant centromeres.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

The FHY3 and FAR1 genes encode transposase‐related proteins involved in regulation of gene expression by the phytochrome A‐signaling pathway

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

The COP9 Signalosome Interacts Physically with SCFCOI1 and Modulates Jasmonate Responses

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

ARC5, a cytosolic dynamin-like protein from plants, is part of the chloroplast division machinery

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Centromere satellites from Arabidopsis populations: maintenance of conserved and variable domains

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

The hy3 Long Hypocotyl Mutant of Arabidopsis Is Deficient in Phytochrome B.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Arabidopsis FHY3 defines a key phytochrome A signaling component directly interacting with its homologous partner FAR1.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

FHY1: a phytochrome A-specific signal transducer

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Significance analysis of microarrays applied to the ionizing radiation response

25 August 2018

1 reference

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Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes

25 August 2018

1 reference

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Light: an indicator of time and place.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Genetic definition and sequence analysis of Arabidopsis centromeres.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

The FAR1 locus encodes a novel nuclear protein specific to phytochrome A signaling

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Chloroplast division in higher plants requires members of two functionally divergent gene families with homology to bacterial ftsZ.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

TRANSFAC: a database on transcription factors and their DNA binding sites

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

hy8, a new class of arabidopsis long hypocotyl mutants deficient in functional phytochrome A.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

COP1, an Arabidopsis regulatory gene, encodes a protein with both a zinc-binding motif and a G beta homologous domain

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226222

Novel phytochrome sequences in Arabidopsis thaliana: structure, evolution, and differential expression of a plant regulatory photoreceptor family

25 August 2018

1 reference

12 December 2020

Phytochrome A null mutants of Arabidopsis display a wild-type phenotype in white light

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12 December 2020

Epidermal cell fate determination in Arabidopsis: patterns defined by a steroid-inducible regulator

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12 December 2020

The distinctive roles of five different ARC genes in the chloroplast division process in Arabidopsis

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12 December 2020

Isolation and Initial Characterization of Arabidopsis Mutants That Are Deficient in Phytochrome A

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12 December 2020

Characterization of chloroplast division using the Arabidopsis mutant arc5

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12 December 2020

Identifiers

DOI

10.1105/TPC.111.085126

1 reference

14 March 2018

0 references

1 reference

14 March 2018