(Q50919442)

English

The indistinguishability of epitopes from protein surface is explained by the distinct binding preferences of each of the six antigen-binding loops.

scientific article published on 10 June 2013

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scholarly article

1 reference

Europe PubMed Central

25 March 2018

http://europepmc.org/abstract/MED/23754530

The indistinguishability of epitopes from protein surface is explained by the distinct binding preferences of each of the six antigen-binding loops. (English)

1 reference

Europe PubMed Central

25 March 2018

http://europepmc.org/abstract/MED/23754530

author name string

Vered Kunik

1

1 reference

Europe PubMed Central

25 March 2018

http://europepmc.org/abstract/MED/23754530

Yanay Ofran

2

1 reference

Europe PubMed Central

25 March 2018

http://europepmc.org/abstract/MED/23754530

publication date

10 June 2013

1 reference

Europe PubMed Central

25 March 2018

http://europepmc.org/abstract/MED/23754530

Protein Engineering Design and Selection

1 reference

Europe PubMed Central

25 March 2018

http://europepmc.org/abstract/MED/23754530

26

1 reference

Europe PubMed Central

25 March 2018

http://europepmc.org/abstract/MED/23754530

10

1 reference

Europe PubMed Central

25 March 2018

http://europepmc.org/abstract/MED/23754530

599-609

1 reference

Europe PubMed Central

25 March 2018

http://europepmc.org/abstract/MED/23754530

Standard conformations for the canonical structures of immunoglobulins

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Identification of differences in the specificity-determining residues of antibodies that recognize antigens of different size: implications for the rational design of antibody repertoires.

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Detecting laterally transferred genes: use of entropic clustering methods and genome position

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Affinity maturation of antibodies assisted by in silico modeling.

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Length of the antibody heavy chain complementarity determining region 3 as a specificity-determining factor

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Intrinsic and extrinsic factors in protein antigenic structure

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

The intrinsic contributions of tyrosine, serine, glycine and arginine to the affinity and specificity of antibodies

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Benchmarking B cell epitope prediction: underperformance of existing methods

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Computational identification of antigen-binding antibody fragments

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Predicting functionally important residues from sequence conservation.

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

The nature of the accessible and buried surfaces in proteins

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Conformations of immunoglobulin hypervariable regions

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Analysis of the antigen combining site: correlations between length and sequence composition of the hypervariable loops and the nature of the antigen

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Cation-pi interactions in protein-protein interfaces

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Synthetic antibodies from a four-amino-acid code: a dominant role for tyrosine in antigen recognition

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Tyrosine plays a dominant functional role in the paratope of a synthetic antibody derived from a four amino acid code

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Analysis of symbolic sequences using the Jensen-Shannon divergence.

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Protein-protein interactions: a review of protein dimer structures

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Principles of protein-protein interactions

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Analysis of protein-protein interaction sites using surface patches

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Prediction of protein-protein interaction sites using patch analysis.

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

AAindex: amino acid index database

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Principles of protein-protein interactions: what are the preferred ways for proteins to interact?

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Structural analysis of B-cell epitopes in antibody:protein complexes

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Structural consensus among antibodies defines the antigen binding site

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Paratome: an online tool for systematic identification of antigen-binding regions in antibodies based on sequence or structure

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Structural classification of CDR-H3 revisited: a lesson in antibody modeling

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Computer-aided antibody design

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Epitopes on protein antigens: misconceptions and realities.

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Divergence measures based on the Shannon entropy

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

The atomic structure of protein-protein recognition sites

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

A generic approach to evaluate how B-cell epitopes are surface-exposed on protein structures.

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Antibody-antigen interactions: contact analysis and binding site topography.

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

ProMate: a structure based prediction program to identify the location of protein-protein binding sites

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

A new clustering of antibody CDR loop conformations

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Antigenic determinants in proteins coincide with surface regions accessible to large probes (antibody domains).

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Analysing six types of protein-protein interfaces

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Antibody-protein interactions: benchmark datasets and prediction tools evaluation

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Antigen-binding site anatomy and somatic mutations in antibodies that recognize different types of antigens.

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Identifying hubs in protein interaction networks

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Computational characterization of B-cell epitopes

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

The FoldX web server: an online force field

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Electrostatic aspects of protein-protein interactions.

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Use of amino acid composition to predict epitope residues of individual antibodies.

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

What is a B-cell epitope?

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Structural basis for germ-line gene usage of a potent class of antibodies targeting the CD4-binding site of HIV-1 gp120.

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

An analysis of the sequences of the variable regions of Bence Jones proteins and myeloma light chains and their implications for antibody complementarity

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Length distribution of CDRH3 in antibodies

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Hydrogen bonds and salt bridges across protein-protein interfaces.

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Protein binding versus protein folding: the role of hydrophilic bridges in protein associations

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Expressed murine and human CDR-H3 intervals of equal length exhibit distinct repertoires that differ in their amino acid composition and predicted range of structures

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Mining for the antibody-antigen interacting associations that predict the B cell epitopes

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Antibody-specified B-cell epitope prediction in line with the principle of context-awareness

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZT027

21 January 2018

Identifiers

10.1093/PROTEIN/GZT027

1 reference

Europe PubMed Central

25 March 2018

http://europepmc.org/abstract/MED/23754530

1 reference

Europe PubMed Central

25 March 2018

http://europepmc.org/abstract/MED/23754530

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