(Q50948476)

25 March 2018

title

Challenges in developing DNA and RNA biomarkers of inflammation. (English)

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25 March 2018

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Peter C Dedon

1

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25 March 2018

Michael S DeMott

2

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25 March 2018

C Eric Elmquist

3

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25 March 2018

Erin G Prestwich

4

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25 March 2018

Jose L McFaline

5

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25 March 2018

Bo Pang

6

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25 March 2018

publication date

1 August 2007

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25 March 2018

published in

Biomarkers in Medicine

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25 March 2018

volume

1

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25 March 2018

issue

2

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25 March 2018

page(s)

293-312

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25 March 2018

Effect of diet on cancer development: is oxidative DNA damage a biomarker?

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Nitric oxide: pathophysiological mechanisms

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Nitric oxide and macrophage function

21 January 2018

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Kinetic analysis of the fate of nitric oxide synthesized by macrophages in vitro

21 January 2018

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Nitrosation of amines by stimulated macrophages

21 January 2018

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Nitric oxide: a new paradigm for second messengers.

21 January 2018

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The biological lifetime of nitric oxide: implications for the perivascular dynamics of NO and O2.

21 January 2018

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The reaction of no with superoxide

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Formation and properties of peroxynitrite as studied by laser flash photolysis, high-pressure stopped-flow technique, and pulse radiolysis

21 January 2018

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Mutagenesis associated with nitric oxide production in macrophages

21 January 2018

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Growth and viability of macrophages continuously stimulated to produce nitric oxide

21 January 2018

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Mutagenesis associated with nitric oxide production in transgenic SJL mice

21 January 2018

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Myeloperoxidase: friend and foe

21 January 2018

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Biological reactivity and biomarkers of the neutrophil oxidant, hypochlorous acid

21 January 2018

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Chlorination of bacterial and neutrophil proteins during phagocytosis and killing of Staphylococcus aureus

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Artifact-free quantification of free 3-chlorotyrosine, 3-bromotyrosine, and 3-nitrotyrosine in human plasma by electron capture-negative chemical ionization gas chromatography mass spectrometry and liquid chromatography-electrospray ionization tande

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Myeloperoxidase-catalyzed 3-chlorotyrosine formation in dialysis patients

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Biomarkers of myeloperoxidase-derived hypochlorous acid

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Detection of chlorinated DNA and RNA nucleosides by HPLC coupled to tandem mass spectrometry as potential biomarkers of inflammation.

21 January 2018

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Detection and quantification of 5-chlorocytosine in DNA by stable isotope dilution and gas chromatography/negative ion chemical ionization/mass spectrometry

21 January 2018

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Chlorination of guanosine and other nucleosides by hypochlorous acid and myeloperoxidase of activated human neutrophils. Catalysis by nicotine and trimethylamine

21 January 2018

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Nitrite-induced deamination and hypochlorite-induced oxidation of DNA in intact human respiratory tract epithelial cells

21 January 2018

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The physiological role and pharmacological potential of nitric oxide in neutrophil activation

21 January 2018

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Formation of 8-nitroguanosine in cellular RNA as a biomarker of exposure to reactive nitrogen species

21 January 2018

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Nitration of unsaturated fatty acids by nitric oxide-derived reactive nitrogen species peroxynitrite, nitrous acid, nitrogen dioxide, and nitronium ion

21 January 2018

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Novel products generated from 2'-deoxyguanosine by hypochlorous acid or a myeloperoxidase-H2O2-Cl- system: identification of diimino-imidazole and amino-imidazolone nucleosides

21 January 2018

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Absence of 2'-deoxyoxanosine and presence of abasic sites in DNA exposed to nitric oxide at controlled physiological concentrations

21 January 2018

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Relatively small increases in the steady-state levels of nucleobase deamination products in DNA from human TK6 cells exposed to toxic levels of nitric oxide

21 January 2018

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The chemistry of DNA damage from nitric oxide and peroxynitrite

21 January 2018

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Nitrogen dioxide as an oxidizing agent of 8-oxo-7,8-dihydro-2'-deoxyguanosine but not of 2'-deoxyguanosine

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Peroxynitrite-induced DNA damage in the supF gene: correlation with the mutational spectrum.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Peroxynitrite-induced oxidation and nitration products of guanine and 8-oxoguanine: structures and mechanisms of product formation

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Oxidative damage to DNA: formation, measurement and biochemical features.

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.2.293

One-electron oxidation of DNA and inflammation processes

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Oxy radicals, lipid peroxidation and DNA damage

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Lipid peroxidation in aging brain and Alzheimer's disease

21 January 2018

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Quantitative screening of protein biomarkers of early glycation, advanced glycation, oxidation and nitrosation in cellular and extracellular proteins by tandem mass spectrometry multiple reaction monitoring

21 January 2018

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Glycation in diabetic neuropathy: characteristics, consequences, causes, and therapeutic options

21 January 2018

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Role of oxidant species in aging

21 January 2018

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Free radical-mediated oxidation of free amino acids and amino acid residues in proteins

21 January 2018

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Oxidation of Methionine Residues of Proteins: Biological Consequences

21 January 2018

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4-Hydroperoxy-2-nonenal-induced formation of 1,N2-etheno-2'-deoxyguanosine adducts.

21 January 2018

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Endogenous lipid hydroperoxide-mediated DNA-adduct formation in min mice.

21 January 2018

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Etheno DNA-base adducts from endogenous reactive species

21 January 2018

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Analysis of FeII-mediated decomposition of a linoleic acid-derived lipid hydroperoxide by liquid chromatography/mass spectrometry

21 January 2018

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Oxidative DNA damage and cardiovascular disease

21 January 2018

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Lipid hydroperoxide-mediated DNA damage

21 January 2018

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Endogenous formation and significance of 1,N2-propanodeoxyguanosine adducts

21 January 2018

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Lipid peroxidation as a potential endogenous source for the formation of exocyclic DNA adducts.

21 January 2018

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DNA modifications by the mutagen glyoxal: adduction to G and C, deamination of C and GC and GA cross-linking.

21 January 2018

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Indirect mutagenesis by oxidative DNA damage: formation of the pyrimidopurinone adduct of deoxyguanosine by base propenal

21 January 2018

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Formation of the 1,N2-glyoxal adduct of deoxyguanosine by phosphoglycolaldehyde, a product of 3'-deoxyribose oxidation in DNA.

21 January 2018

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Reaction of cis- and trans-2-Butene-1,4-dial with 2'-deoxycytidine to form stable oxadiazabicyclooctaimine adducts

21 January 2018

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Effects of DNA structure on oxopropenylation by the endogenous mutagens malondialdehyde and base propenal

21 January 2018

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Reaction of 2'-deoxyribonucleosides with cis- and trans-1,4-dioxo-2-butene

21 January 2018

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Chemical and biological evidence for base propenals as the major source of the endogenous M1dG adduct in cellular DNA.

21 January 2018

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3-Chlorotyrosine, a specific marker of myeloperoxidase-catalyzed oxidation, is markedly elevated in low density lipoprotein isolated from human atherosclerotic intima

21 January 2018

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Human neutrophils employ the myeloperoxidase-hydrogen peroxide-chloride system to convert hydroxy-amino acids into glycolaldehyde, 2-hydroxypropanal, and acrolein. A mechanism for the generation of highly reactive alpha-hydroxy and alpha,beta-unsatu

21 January 2018

1 reference

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Comparison of analyses of urinary 8-hydroxy-2'-deoxyguanosine by isotope-dilution liquid chromatography with electrospray tandem mass spectrometry and by enzyme-linked immunosorbent assay

21 January 2018

1 reference

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New immunoaffinity-LC-MS/MS methodology reveals that Aag null mice are deficient in their ability to clear 1,N6-etheno-deoxyadenosine DNA lesions from lung and liver in vivo

21 January 2018

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In vivo oxidative metabolism of a major peroxidation-derived DNA adduct, M1dG.

21 January 2018

1 reference

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Analysis of M1G-dR in DNA by aldehyde reactive probe labeling and liquid chromatography tandem mass spectrometry

21 January 2018

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Pyrimido[1,2-a]-purin-10(3H)-one, M1G, is less prone to artifact than base oxidation

21 January 2018

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32P-postlabeling methods for DNA adduct detection: overview and critical evaluation

21 January 2018

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https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Comparative analysis of baseline 8-oxo-7,8-dihydroguanine in mammalian cell DNA, by different methods in different laboratories: an approach to consensus

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Capillary electrophoresis analysis of DNA adducts as biomarkers for carcinogenesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Free radical-induced damage to DNA: mechanisms and measurement

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

High-performance liquid chromatography--tandem mass spectrometry measurement of radiation-induced base damage to isolated and cellular DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Artifacts associated with the measurement of oxidized DNA bases.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Endogenous oxidative DNA base modifications analysed with repair enzymes and GC/MS technique

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Facts about the artifacts in the measurement of oxidative DNA base damage by gas chromatography-mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Detection and quantification of 1,N6-ethenoadenine in human urine by stable isotope dilution capillary gas chromatography/negative ion chemical ionization/mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Uracil in DNA, determined by an improved assay, is increased when deoxynucleosides are added to folate-deficient cultured human lymphocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Recent aspects of oxidative DNA damage: guanine lesions, measurement and substrate specificity of DNA repair glycosylases

21 January 2018

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An improved liquid chromatography/tandem mass spectrometry method for the determination of 8-oxo-7,8-dihydro-2'-deoxyguanosine in DNA samples using immunoaffinity column purification

21 January 2018

1 reference

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What role for AID: mutator, or assembler of the immunoglobulin mutasome?

21 January 2018

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RNA editing by adenosine deaminases that act on RNA

21 January 2018

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Identification, expression, and characterization of Escherichia coli guanine deaminase

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Are we sure we know how to measure 8-oxo-7,8-dihydroguanine in DNA from human cells?

21 January 2018

1 reference

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Cellular background level of 8-oxo-7,8-dihydro-2'-deoxyguanosine: an isotope based method to evaluate artefactual oxidation of DNA during its extraction and subsequent work-up.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

DNA oxidation matters: the HPLC-electrochemical detection assay of 8-oxo-deoxyguanosine and 8-oxo-guanine

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

A review of approaches to the analysis of 3-nitrotyrosine

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

3-Nitrotyrosine butyl ester: a novel derivative to assess tyrosine nitration in rat plasma by liquid chromatography-tandem mass spectrometry detection

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Nitric oxide production in SJL mice bearing the RcsX lymphoma: a model for in vivo toxicological evaluation of NO

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Comparison of DNA adduct levels associated with oxidative stress in human pancreas.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Assay of excised oxidative DNA lesions: isolation of 8-oxoguanine and its nucleoside derivatives from biological fluids with a monoclonal antibody column

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Detection of circulating tumour DNA in the blood (plasma/serum) of cancer patients

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Simultaneous assay of DNA and RNA targets in the whole blood using novel isolation procedure and molecular colony amplification

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Circulating (cell-free) nucleic acids--a promising, non-invasive tool for early detection of several human diseases

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Diagnostic developments involving cell-free (circulating) nucleic acids

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Circulating DNA and DNase activity in human blood

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Analysis of urinary 8-nitroguanine, a marker of nitrative nucleic acid damage, by high-performance liquid chromatography-electrochemical detection coupled with immunoaffinity purification: association with cigarette smoking

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Quantification of urinary excretion of 1,N6-ethenoadenine, a potential biomarker of lipid peroxidation, in humans by stable isotope dilution liquid chromatography-electrospray ionization-tandem mass spectrometry: comparison with gas chromatography-m

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Quantification of 1,N6-etheno-2'-deoxyadenosine in human urine by column-switching LC/APCI-MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Quantification of urinary etheno-DNA adducts by column-switching LC/APCI-MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Analysis of 3,N(4)-ethenocytosine in DNA and in human urine by isotope dilution gas chromatography/negative ion chemical ionization/mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Urinary measurement of 8-OxodG, 8-OxoGua, and 5HMUra: a noninvasive assessment of oxidative damage to DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

DNA repair is responsible for the presence of oxidatively damaged DNA lesions in urine

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Does measurement of oxidative damage to DNA have clinical significance?

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Measurement of 8-oxo-2'-deoxyguanosine and 8-oxo-2'-deoxyadenosine in DNA and human urine by high performance liquid chromatography-electrospray tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Quantification of 8-oxo-guanine and guanine as the nucleobase, nucleoside and deoxynucleoside forms in human urine by high-performance liquid chromatography-electrospray tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Urinary 8-hydroxyguanine may be a better marker of oxidative stress than 8-hydroxydeoxyguanosine in relation to the life spans of various species

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Effects of basal level of antioxidants on oxidative DNA damage in humans

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Diet is not responsible for the presence of several oxidatively damaged DNA lesions in mouse urine

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Biological consequences of free radical-damaged DNA bases.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Duplex DNA catalyzes the chemical rearrangement of a malondialdehyde deoxyguanosine adduct

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Malondialdehyde adducts in DNA arrest transcription by T7 RNA polymerase and mammalian RNA polymerase II.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Metabolism in vitro and in vivo of the DNA base adduct, M1G.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

Prognostic significance of the Centers for Disease Control/American Heart Association high-sensitivity C-reactive protein cut points for cardiovascular and other outcomes in patients with stable coronary artery disease

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F17520363.1.2.293

21 January 2018

Identifiers

DOI

10.2217/17520363.1.2.293

1 reference

25 March 2018

1 reference

25 March 2018