(Q51509036)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199791%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

title

Using Weeder, Pscan, and PscanChIP for the Discovery of Enriched Transcription Factor Binding Site Motifs in Nucleotide Sequences (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199791%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199791%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

author name string

Graziano Pesole

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199791%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Giulio Pavesi

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199791%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

publication date

8 September 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199791%20AND%20SRC:MED&resulttype=core&format=json

Current Protocols in Bioinformatics

16 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199791%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

volume

47

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199791%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

page(s)

2.11.1-31

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199791%20AND%20SRC:MED&resulttype=core&format=json

WebLogo: A Sequence Logo Generator

16 February 2020

cites work

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0211S47

What is the expectation maximization algorithm?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0211S47

NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0211S47

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0211S47

Exploring relationships and mining data with the UCSC Gene Sorter

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0211S47

STAMP: a web tool for exploring DNA-binding motif similarities

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0211S47

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0211S47

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0211S47

Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0211S47

Computation for ChIP-seq and RNA-seq studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0211S47

Sequence logos: a new way to display consensus sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0211S47

DNA binding sites: representation and discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0211S47

Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0211S47

Motif discovery and transcription factor binding sites before and after the next-generation sequencing era.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0211S47

Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0211S47

PscanChIP: Finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0211S47