(Q51625280)

8 April 2018

title

Rapid ab initio prediction of RNA pseudoknots via graph tree decomposition. (English)

1 reference

8 April 2018

author name string

Jizhen Zhao

series ordinal

1

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8 April 2018

Russell L Malmberg

series ordinal

2

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8 April 2018

Liming Cai

series ordinal

3

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8 April 2018

publication date

29 September 2007

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8 April 2018

number of pages

15

1 reference

Journal of Mathematical Biology

inferred from page(s)

published in

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8 April 2018

volume

56

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8 April 2018

issue

1-2

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8 April 2018

page(s)

145-159

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8 April 2018

maintained by WikiProject

WikiProject Mathematics

0 references

exact match

https://scigraph.springernature.com/pub.10.1007/s00285-007-0124-4

0 references

cites work

PseudoBase: a database with RNA pseudoknots

1 reference

12 December 2020

Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting

1 reference

12 December 2020

Prediction of RNA secondary structure, including pseudoknotting, by computer simulation

1 reference

12 December 2020

Stochastic context-free grammars for tRNA modeling

1 reference

12 December 2020

RNA pseudoknot prediction in energy-based models

1 reference

12 December 2020

An RNA folding method capable of identifying pseudoknots and base triples.

1 reference

12 December 2020

RNA pseudoknots that interact with components of the translation apparatus

1 reference

12 December 2020

A dynamic programming algorithm for RNA structure prediction including pseudoknots

1 reference

12 December 2020

An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.

1 reference

12 December 2020

RNA sequence analysis using covariance models

1 reference

12 December 2020

A partition function algorithm for nucleic acid secondary structure including pseudoknots

1 reference

12 December 2020

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

1 reference

12 December 2020

Prediction of common secondary structures of RNAs: a genetic algorithm approach

1 reference

12 December 2020

The Ribonuclease P Database

1 reference

12 December 2020

HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.

1 reference

12 December 2020

RNAshapes: an integrated RNA analysis package based on abstract shapes.

1 reference

12 December 2020

Compilation of tRNA sequences and sequences of tRNA genes

1 reference

12 December 2020

A conformational switch controls hepatitis delta virus ribozyme catalysis

1 reference

12 December 2020

Pfold: RNA secondary structure prediction using stochastic context-free grammars

1 reference

12 December 2020

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

1 reference

12 December 2020

A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences

1 reference

12 December 2020

Tree decomposition based fast search of RNA structures including pseudoknots in genomes.

1 reference

12 December 2020

Crystal structure of a self-splicing group I intron with both exons

1 reference

12 December 2020

10.1007/S00285-007-0124-4

Identifiers

DOI

1 reference

8 April 2018

release_734cy647ovabvfi2nv57quiu2i

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/734cy647ovabvfi2nv57quiu2i

24 November 2022

mapped directly with Wikidata item

PubMed ID

17906862

1 reference

8 April 2018