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English
HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.
scientific article published on October 2005
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scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370833
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16199760%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
title
HotKnots: heuristic prediction of RNA secondary structures including pseudoknots
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370833
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16199760%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
main subject
molecular knots
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inferred from title
author
Baharak Rastegari
series ordinal
2
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stated in
Europe PubMed Central
PMC publication ID
1370833
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16199760%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
Holger H. Hoos
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4
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370833
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16199760%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
Anne Condon
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3
object named as
Anne Condon
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stated in
Europe PubMed Central
PMC publication ID
1370833
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16199760%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
author name string
Jihong Ren
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370833
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16199760%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
language of work or name
English
0 references
publication date
1 October 2005
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370833
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16199760%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
published in
RNA
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370833
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16199760%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
volume
11
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370833
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16199760%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
issue
10
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370833
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16199760%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
page(s)
1494-1504
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370833
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16199760%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
cites work
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370833
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26 October 2017
Secondary structure prediction for aligned RNA sequences
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PubMed Central
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26 October 2017
PseudoBase: structural information on RNA pseudoknots
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370833
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26 October 2017
RNA pseudoknot prediction in energy-based models
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PubMed Central
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26 October 2017
Modeling RNA folding paths with pseudoknots: application to hepatitis delta virus ribozyme
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26 October 2017
Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting
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26 October 2017
Secondary structure of vertebrate telomerase RNA
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26 October 2017
RNA secondary structure prediction using stochastic context-free grammars and evolutionary history
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26 October 2017
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
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26 October 2017
A dynamic programming algorithm for RNA structure prediction including pseudoknots
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26 October 2017
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PubMed Central
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26 October 2017
Crystal structure of a hepatitis delta virus ribozyme
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26 October 2017
Compilation of tRNA sequences and sequences of tRNA genes
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26 October 2017
The role of the pseudoknot at the 3' end of turnip yellow mosaic virus RNA in minus-strand synthesis by the viral RNA-dependent RNA polymerase
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26 October 2017
RNA sequence analysis using covariance models
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26 October 2017
An APL-programmed genetic algorithm for the prediction of RNA secondary structure
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26 October 2017
Identification of common molecular subsequences
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370833
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26 October 2017
An energy model that predicts the correct folding of both the tRNA and the 5S RNA molecules
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26 October 2017
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
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26 October 2017
Five pseudoknots are present at the 204 nucleotides long 3' noncoding region of tobacco mosaic virus RNA.
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26 October 2017
On finding all suboptimal foldings of an RNA molecule
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26 October 2017
The equilibrium partition function and base pair binding probabilities for RNA secondary structure
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26 October 2017
Prediction of RNA secondary structure, including pseudoknotting, by computer simulation
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26 October 2017
RNA pseudoknots that inhibit human immunodeficiency virus type 1 reverse transcriptase
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26 October 2017
Complete suboptimal folding of RNA and the stability of secondary structures.
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29 May 2018
Secondary structure prediction of interacting RNA molecules.
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370833
retrieved
17 August 2018
An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370833
retrieved
17 August 2018
A partition function algorithm for nucleic acid secondary structure including pseudoknots
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370833
retrieved
17 August 2018
The computer simulation of RNA folding pathways using a genetic algorithm.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370833
retrieved
17 August 2018
An interactive framework for RNA secondary structure prediction with a dynamical treatment of constraints.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370833
retrieved
17 August 2018
Identifiers
DOI
10.1261/RNA.7284905
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370833
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16199760%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
PMC publication ID
1370833
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370833
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16199760%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
PubMed publication ID
16199760
1 reference
stated in
Europe PubMed Central
PMC publication ID
1370833
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16199760%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
ResearchGate publication ID
7564998
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