(Q51627727)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21132840%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

title

Computing ensembles of transitions from stable states: Dynamic importance sampling (English)

1 reference

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17 January 2020

1

1 reference

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17 January 2020

Oliver Beckstein

series ordinal

2

1 reference

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17 January 2020

author name string

Elizabeth J Denning

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21132840%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

Thomas B Woolf

series ordinal

4

1 reference

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17 January 2020

publication date

1 January 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21132840%20AND%20SRC:MED&resulttype=core&format=json

Journal of Computational Chemistry

17 January 2020

published in

1 reference

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17 January 2020

volume

32

1 reference

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17 January 2020

issue

2

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17 January 2020

page(s)

196-209

1 reference

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17 January 2020

cites work

Forced thermal ratchets

1 reference

12 December 2020

Cooperative transport of Brownian particles

1 reference

12 December 2020

Precise numerics versus theory for correlation ratchets

1 reference

12 December 2020

Thermal Ratchets in 1+1 Dimensions

1 reference

12 December 2020

Structure of human apolactoferrin at 2.0 A resolution. Refinement and analysis of ligand-induced conformational change

1 reference

12 December 2020

Building-block approach for determining low-frequency normal modes of macromolecules.

1 reference

12 December 2020

Efficient dynamic importance sampling of rare events in one dimension.

1 reference

12 December 2020

Lactoferrin and transferrin: functional variations on a common structural framework

1 reference

12 December 2020

Crystal structures of S100A6 in the Ca(2+)-free and Ca(2+)-bound states: the calcium sensor mechanism of S100 proteins revealed at atomic resolution

1 reference

12 December 2020

Efficient generation of feasible pathways for protein conformational transitions

1 reference

12 December 2020

Escaping free-energy minima

1 reference

12 December 2020

Elastic models of conformational transitions in macromolecules

1 reference

12 December 2020

Determination of a transition state at atomic resolution from protein engineering data

1 reference

12 December 2020

MolMovDB: analysis and visualization of conformational change and structural flexibility

1 reference

12 December 2020

Three-dimensional solution structure of the B domain of staphylococcal protein A: comparisons of the solution and crystal structures

1 reference

12 December 2020

Crystallographic evidence of a large ligand-induced hinge-twist motion between the two domains of the maltodextrin binding protein involved in active transport and chemotaxis

1 reference

12 December 2020

A comparative study of motor-protein motions by using a simple elastic-network model

1 reference

12 December 2020

Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations

1 reference

12 December 2020

Normal-modes-based prediction of protein conformational changes guided by distance constraints

1 reference

12 December 2020

Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes

1 reference

12 December 2020

Simulation of conformational transitions by the restricted perturbation-targeted molecular dynamics method

1 reference

12 December 2020

Mechanism of a molecular valve in the halorhodopsin chloride pump

1 reference

12 December 2020

Transition pathways in complex systems: Application of the finite-temperature string method to the alanine dipeptide

1 reference

12 December 2020

Multiple pathways in conformational transitions of the alanine dipeptide: an application of dynamic importance sampling

1 reference

12 December 2020

Conformational changes of glucose/galactose-binding protein illuminated by open, unliganded, and ultra-high-resolution ligand-bound structures

1 reference

12 December 2020

Efficient and verified simulation of a path ensemble for conformational change in a united-residue model of calmodulin.

1 reference

12 December 2020

Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation

1 reference

12 December 2020

Open-state conformation of the KcsA K+ channel: Monte Carlo normal mode following simulations

1 reference

12 December 2020

A Comparison of Three Perturbation Molecular Dynamics Methods for Modeling Conformational Transitions

1 reference

12 December 2020

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

12 December 2020

Reaction path study of conformational transitions and helix formation in a tetrapeptide

1 reference

12 December 2020

The third IgG-binding domain from streptococcal protein G. An analysis by X-ray crystallography of the structure alone and in a complex with Fab

1 reference

12 December 2020

Weighted-ensemble Brownian dynamics simulations for protein association reactions

1 reference

12 December 2020

Extensive features of tight oligosaccharide binding revealed in high-resolution structures of the maltodextrin transport/chemosensory receptor

1 reference

12 December 2020

Solution conformations and thermodynamics of structured peptides: molecular dynamics simulation with an implicit solvation model.

1 reference

12 December 2020

Identifiers

DOI

10.1002/JCC.21564

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21132840%20AND%20SRC:MED&resulttype=core&format=json

journals/jcc/PerillaBDW11

17 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21132840%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

PubMed publication ID

21132840

1 reference