(Q51629193)

8 April 2018

title

Estimating species trees: methods of phylogenetic analysis when there is incongruence across genes. (English)

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8 April 2018

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1

L Lacey Knowles

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8 April 2018

publication date

17 September 2009

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8 April 2018

published in

Systematic Biology

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8 April 2018

volume

58

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8 April 2018

issue

5

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8 April 2018

page(s)

463-467

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8 April 2018

Bayesian estimation of concordance among gene trees.

cites work

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

Bayesian gene/species tree reconciliation and orthology analysis using MCMC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

Multilocus phylogenetics of a rapid radiation in the genus Thomomys (Rodentia: Geomyidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

Comparison of species tree methods for reconstructing the phylogeny of bearded manakins (Aves: Pipridae, Manacus) from multilocus sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

Species trees from highly incongruent gene trees in rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

Gene tree discordance, phylogenetic inference and the multispecies coalescent

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

High-resolution species trees without concatenation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

Evolutionary trees from DNA sequences: A maximum likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

Dealing with incongruence in phylogenomic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

What is the danger of the anomaly zone for empirical phylogenetics?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

STEM: species tree estimation using maximum likelihood for gene trees under coalescence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

Inconsistency of phylogenetic estimates from concatenated data under coalescence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

Comparison of methods for species-tree inference in the sawfly genus Neodiprion (Hymenoptera: Diprionidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

BEST: Bayesian estimation of species trees under the coalescent model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

Estimating species trees using multiple-allele DNA sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

Estimating species phylogenies using coalescence times among sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

Inferring phylogeny despite incomplete lineage sorting

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: a model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

Phylogenetic MCMC algorithms are misleading on mixtures of trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

The probability of topological concordance of gene trees and species trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

Confounding factors in HGT detection: statistical error, coalescent effects, and multiple solutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP061

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYP061

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8 April 2018

PubMed ID

20525600

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8 April 2018