(Q51911039)

17 April 2018

title

Dihedral angle principal component analysis of molecular dynamics simulations. (English)

1 reference

17 April 2018

principal component analysis

main subject

0 references

author name string

Alexandros Altis

1

1 reference

17 April 2018

Phuong H Nguyen

2

1 reference

17 April 2018

Rainer Hegger

3

1 reference

17 April 2018

Gerhard Stock

4

1 reference

17 April 2018

language of work or name

English

0 references

publication date

1 June 2007

1 reference

17 April 2018

Journal of Chemical Physics

published in

1 reference

17 April 2018

volume

126

1 reference

17 April 2018

page(s)

244111

1 reference

17 April 2018

issue

24

1 reference

17 April 2018

Biomolecular modeling: Goals, problems, perspectives

cites work

1 reference

Theory of protein folding: the energy landscape perspective

21 January 2018

1 reference

From Levinthal to pathways to funnels

21 January 2018

1 reference

Collective motions in proteins: A covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations

21 January 2018

1 reference

Essential dynamics of proteins

21 January 2018

1 reference

Effect of solvent on collective motions in globular protein.

21 January 2018

1 reference

Geometric versus topological clustering: an insight into conformation mapping.

21 January 2018

1 reference

Can principal components yield a dimension reduced description of protein dynamics on long time scales?

21 January 2018

1 reference

Transition Networks for the Comprehensive Characterization of Complex Conformational Change in Proteins.

21 January 2018

1 reference

Are there non-trivial dynamic cross-correlations in proteins?

21 January 2018

1 reference

Protein conformational space in higher order phi-Psi maps

21 January 2018

1 reference

Application of time series analysis on molecular dynamics simulations of proteins: a study of different conformational spaces by principal component analysis.

21 January 2018

1 reference

Extracting Markov Models of Peptide Conformational Dynamics from Simulation Data

21 January 2018

1 reference

Automatic method for identifying reaction coordinates in complex systems.

21 January 2018

1 reference

Long‐Time Protein Folding Dynamics from Short‐Time Molecular Dynamics Simulations

21 January 2018

1 reference

Low-dimensional, free-energy landscapes of protein-folding reactions by nonlinear dimensionality reduction

21 January 2018

1 reference

Complexity of free energy landscapes of peptides revealed by nonlinear principal component analysis.

21 January 2018

1 reference

How complex is the dynamics of Peptide folding?

21 January 2018

1 reference

Dihedral angles of trialanine in D2O determined by combining FTIR and polarized visible Raman spectroscopy

21 January 2018

1 reference

GROMACS: A message-passing parallel molecular dynamics implementation

21 January 2018

1 reference

GROMACS: fast, flexible, and free

21 January 2018

1 reference

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

1 reference

Collective Langevin dynamics of conformational motions in proteins.

21 January 2018

1 reference

Effective stochastic dynamics on a protein folding energy landscape

21 January 2018

1 reference

Hidden complexity of free energy surfaces for peptide (protein) folding

21 January 2018

1 reference

Comment on: “Energy landscape of a small peptide revealed by dihedral angle principal component analysis”

21 January 2018

1 reference

Structure and Dynamics of the Homologous Series of Alanine Peptides: A Joint Molecular Dynamics/NMR Study

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1063/1.2746330

1 reference

17 April 2018

PubMed ID

17614541

1 reference

17 April 2018