(Q46263086)

20 December 2017

title

Effective stochastic dynamics on a protein folding energy landscape (English)

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20 December 2017

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Sichun Yang

1

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José Onuchic

series ordinal

2

object named as

José N Onuchic

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20 December 2017

Herbert Levine

3

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20 December 2017

language of work or name

English

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publication date

1 August 2006

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20 December 2017

Journal of Chemical Physics

published in

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20 December 2017

volume

125

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20 December 2017

issue

5

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20 December 2017

page(s)

054910

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20 December 2017

Theory of protein folding

cites work

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Spin glasses and the statistical mechanics of protein folding

21 January 2018

1 reference

A simple model for calculating the kinetics of protein folding from three-dimensional structures

21 January 2018

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Probing the kinetics of single molecule protein folding

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Quantifying kinetic paths of protein folding

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One-dimensional reaction coordinates for diffusive activated rate processes in many dimensions

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Coarse-grained kinetic computations for rare events: application to micelle formation.

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Folding funnels and frustration in off-lattice minimalist protein landscapes

21 January 2018

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Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

21 January 2018

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Roles of native topology and chain-length scaling in protein folding: a simulation study with a Go-like model.

21 January 2018

1 reference

Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse

21 January 2018

1 reference

Domain swapping is a consequence of minimal frustration

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Protein oligomerization through domain swapping: role of inter-molecular interactions and protein concentration

21 January 2018

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Protein folding funnels: a kinetic approach to the sequence-structure relationship

21 January 2018

1 reference

From Levinthal to pathways to funnels

21 January 2018

1 reference

Understanding protein folding with energy landscape theory. Part I: Basic concepts

21 January 2018

1 reference

Folding a protein in a computer: An atomic description of the folding/unfolding of protein A

21 January 2018

1 reference

Quantifying the roughness on the free energy landscape: entropic bottlenecks and protein folding rates

21 January 2018

1 reference

Topological frustration and the folding of interleukin-1 beta

21 January 2018

1 reference

Folding kinetics of the SH3 domain of PI3 kinase by real-time NMR combined with optical spectroscopy

21 January 2018

1 reference

Protein folding by distributed computing and the denatured state ensemble.

21 January 2018

1 reference

Replica-exchange molecular dynamics method for protein folding

21 January 2018

1 reference

Structure of Met-enkephalin in explicit aqueous solution using replica exchange molecular dynamics

21 January 2018

1 reference

THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method

21 January 2018

1 reference

Thermodynamics of protein folding: a statistical mechanical study of a small all-beta protein

21 January 2018

1 reference

From folding theories to folding proteins: a review and assessment of simulation studies of protein folding and unfolding

21 January 2018

1 reference

Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins

21 January 2018

1 reference

Automated analysis of interatomic contacts in proteins

21 January 2018

1 reference

Coarse molecular dynamics of a peptide fragment: Free energy, kinetics, and long-time dynamics computations

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1063/1.2229206

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20 December 2017

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20 December 2017