(Q51932628)

English

Subunits of the plastid ClpPR protease complex have differential contributions to embryogenesis, plastid biogenesis, and plant development in Arabidopsis.

scientific article published on 12 June 2009

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scholarly article

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31 January 2020

Subunits of the plastid ClpPR protease complex have differential contributions to embryogenesis, plastid biogenesis, and plant development in Arabidopsis (English)

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31 January 2020

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31 January 2020

author name string

Jitae Kim

1

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31 January 2020

Andrea Rudella

2

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31 January 2020

Verenice Ramirez Rodriguez

3

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31 January 2020

Paul Dominic B Olinares

5

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31 January 2020

Klaas J van Wijk

6

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31 January 2020

publication date

12 June 2009

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31 January 2020

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31 January 2020

21

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31 January 2020

1669-1692

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31 January 2020

6

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31 January 2020

Large scale comparative proteomics of a chloroplast Clp protease mutant reveals folding stress, altered protein homeostasis, and feedback regulation of metabolism.

1 reference

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7 September 2018

The plastidial MEP pathway: unified nomenclature and resources

1 reference

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7 September 2018

PPDB, the Plant Proteomics Database at Cornell

1 reference

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7 September 2018

Precision proteomics: the case for high resolution and high mass accuracy

1 reference

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7 September 2018

Identification of new protein substrates for the chloroplast ATP-dependent Clp protease supports its constitutive role in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

A member of the Whirly family is a multifunctional RNA- and DNA-binding protein that is essential for chloroplast biogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Mutations in SUPPRESSOR OF VARIEGATION1, a factor required for normal chloroplast translation, suppress var2-mediated leaf variegation in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Loss of the N-terminal domain of chlorophyllide a oxygenase induces photodamage during greening of Arabidopsis seedlings

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Sorting signals, N-terminal modifications and abundance of the chloroplast proteome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

SsTypA1, a chloroplast-specific TypA/BipA-type GTPase from the halophytic plant Suaeda salsa, plays a role in oxidative stress tolerance.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Galactolipid synthesis in chloroplast inner envelope is essential for proper thylakoid biogenesis, photosynthesis, and embryogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Interorganellar communication

1 reference

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7 September 2018

Quantitative mass spectrometry in proteomics: a critical review

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

ClpP: a distinctive family of cylindrical energy-dependent serine proteases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Plastoglobules: versatile lipoprotein particles in plastids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Chloroplast ribosome release factor 1 (AtcpRF1) is essential for chloroplast development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Plants need their vitamins too.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Signals from chloroplasts converge to regulate nuclear gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Further in vivo studies on the role of the molecular chaperone, Hsp93, in plastid protein import.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Alterations in photosynthesis in Arabidopsis lacking IMMUTANS, a chloroplast terminal oxidase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

The N-end rule pathway for regulated proteolysis: prokaryotic and eukaryotic strategies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Clp protease controls chlorophyll b synthesis by regulating the level of chlorophyllide a oxygenase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

1 reference

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7 September 2018

ATP-dependent proteases of bacteria: recognition logic and operating principles

1 reference

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7 September 2018

An Arabidopsis thaliana virescent mutant reveals a role for ClpR1 in plastid development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

An Arabidopsis chloroplast-targeted Hsp101 homologue, APG6, has an essential role in chloroplast development as well as heat-stress response.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

A nuclear-encoded ClpP subunit of the chloroplast ATP-dependent Clp protease is essential for early development in Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Crystal structure at 1.9A of E. coli ClpP with a peptide covalently bound at the active site.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Sugar sensing and signaling in plants: conserved and novel mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Protein degradation machineries in plastids.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Recent advances in the study of Clp, FtsH and other proteases located in chloroplasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

The chloroplast ClpP complex in Chlamydomonas reinhardtii contains an unusual high molecular mass subunit with a large apical domain.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

RNR1, a 3'-5' exoribonuclease belonging to the RNR superfamily, catalyzes 3' maturation of chloroplast ribosomal RNAs in Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

In vivo studies on the roles of Tic110, Tic40 and Hsp93 during chloroplast protein import.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Ribosomal RNA processing and an RNase R family member in chloroplasts of Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Inactivation of the clpC1 gene encoding a chloroplast Hsp100 molecular chaperone causes growth retardation, leaf chlorosis, lower photosynthetic activity, and a specific reduction in photosystem content.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

The capacity of green oilseeds to utilize photosynthesis to drive biosynthetic processes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Mutations in ClpC2/Hsp100 suppress the requirement for FtsH in thylakoid membrane biogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Identification of genes required for embryo development in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Altered expression of the Arabidopsis ortholog of DCL affects normal plant development.

1 reference

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7 September 2018

Biosynthesis of isoprenoids via the non-mevalonate pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

AtNAP7 is a plastidic SufC-like ATP-binding cassette/ATPase essential for Arabidopsis embryogenesis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Loss of plastidic lysophosphatidic acid acyltransferase causes embryo-lethality in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Mutants for photosystem I subunit D of Arabidopsis thaliana: effects on photosynthesis, photosystem I stability and expression of nuclear genes for chloroplast functions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Plastid lysophosphatidyl acyltransferase is essential for embryo development in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications.

1 reference

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7 September 2018

Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.

1 reference

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7 September 2018

The plastid clpP1 protease gene is essential for plant development.

1 reference

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7 September 2018

Diversity of the biosynthesis of the isoprene units

1 reference

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7 September 2018

The Arabidopsis SeedGenes Project

1 reference

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7 September 2018

PNPase activity determines the efficiency of mRNA 3'-end processing, the degradation of tRNA and the extent of polyadenylation in chloroplasts

1 reference

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7 September 2018

Elucidation of the methylerythritol phosphate pathway for isoprenoid biosynthesis in bacteria and plastids. A metabolic milestone achieved through genomics.

1 reference

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7 September 2018

Insertional mutagenesis of genes required for seed development in Arabidopsis thaliana

1 reference

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7 September 2018

FLU: a negative regulator of chlorophyll biosynthesis in Arabidopsis thaliana

1 reference

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7 September 2018

An essential role of a TatC homologue of a Delta pH- dependent protein transporter in thylakoid membrane formation during chloroplast development in Arabidopsis thaliana

1 reference

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7 September 2018

The Arabidopsis embryo mutant schlepperless has a defect in the chaperonin-60alpha gene

1 reference

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7 September 2018

The light sensitivity of ATP synthase mutants of Chlamydomonas reinhardtii

1 reference

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7 September 2018

Identification of a 350-kDa ClpP protease complex with 10 different Clp isoforms in chloroplasts of Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714938

7 September 2018

The chloroplast clpP gene, encoding a proteolytic subunit of ATP-dependent protease, is indispensable for chloroplast development in tobacco

1 reference

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7 September 2018

A pigment-binding protein essential for regulation of photosynthetic light harvesting.

1 reference

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7 September 2018

Analysis of molecular masses and oligomeric states of protein complexes by blue native electrophoresis and isolation of membrane protein complexes by two-dimensional native electrophoresis

1 reference

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7 September 2018

Measurement of protein using bicinchoninic acid

1 reference

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7 September 2018

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

1 reference

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30 November 2018

Correlation of Relative Abundance Ratios Derived from Peptide Ion Chromatograms and Spectrum Counting for Quantitative Proteomic Analysis Using Stable Isotope Labeling

1 reference

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30 November 2018

Isolation of Chloroplast Proteins from Arabidopsis thaliana for Proteome Analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19525416

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A stromal Hsp100 protein is required for normal chloroplast development and function in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19525416

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for a role of ClpP in the degradation of the chloroplast cytochrome b(6)f complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/19525416

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A gateway cloning vector set for high-throughput functional analysis of genes in planta

1 reference

https://pubmed.ncbi.nlm.nih.gov/19525416

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distinctive types of ATP-dependent Clp proteases in cyanobacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/19525416

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural and functional insights into the chloroplast ATP-dependent Clp protease in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19525416

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The nuclear-encoded chlorophyll-binding photosystem II-S protein is stable in the absence of pigments

1 reference

https://pubmed.ncbi.nlm.nih.gov/19525416

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular physiological analysis of the two plastidic ATP/ADP transporters from Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19525416

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Plant embryogenesis: zygote to seed

1 reference

https://pubmed.ncbi.nlm.nih.gov/19525416

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arabidopsis thaliana mutants reveal a role for CSP41a and CSP41b, two ribosome-associated endonucleases, in chloroplast ribosomal RNA metabolism

1 reference

https://pubmed.ncbi.nlm.nih.gov/19525416

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1105/TPC.108.063784

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19525416%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

0 references

1 reference

Europe PubMed Central

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31 January 2020

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