(Q51958609)

English

Plastid transcriptomics and translatomics of tomato fruit development and chloroplast-to-chromoplast differentiation: chromoplast gene expression largely serves the production of a single protein.

scientific article published on 25 April 2008

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scholarly article

1 reference

Europe PubMed Central

18 April 2018

http://europepmc.org/abstract/MED/18441214

Plastid transcriptomics and translatomics of tomato fruit development and chloroplast-to-chromoplast differentiation: chromoplast gene expression largely serves the production of a single protein. (English)

1 reference

Europe PubMed Central

18 April 2018

http://europepmc.org/abstract/MED/18441214

0 references

transcriptomics

1 reference

based on heuristic

inferred from title

2

object named as

Ralph Bock

1 reference

Europe PubMed Central

18 April 2018

http://europepmc.org/abstract/MED/18441214

author name string

Sabine Kahlau

1

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Europe PubMed Central

18 April 2018

http://europepmc.org/abstract/MED/18441214

publication date

25 April 2008

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Europe PubMed Central

18 April 2018

http://europepmc.org/abstract/MED/18441214

1 reference

Europe PubMed Central

18 April 2018

http://europepmc.org/abstract/MED/18441214

20

1 reference

Europe PubMed Central

18 April 2018

http://europepmc.org/abstract/MED/18441214

4

1 reference

Europe PubMed Central

18 April 2018

http://europepmc.org/abstract/MED/18441214

856-874

1 reference

Europe PubMed Central

18 April 2018

http://europepmc.org/abstract/MED/18441214

copyright license

Creative Commons Attribution-NonCommercial 4.0 International

19 January 2021

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Plastid gene expression during fruit ripening in tomato.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

25 August 2018

Expression of nuclear and plastid genes for photosynthesis-specific proteins during tomato fruit development and ripening.

1 reference

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25 August 2018

Plastid changes during the conversion of chloroplasts to chromoplasts in ripening tomatoes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

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Chlororespiration and cyclic electron flow around PSI during photosynthesis and plant stress response

1 reference

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Contained metabolic engineering in tomatoes by expression of carotenoid biosynthesis genes from the plastid genome.

1 reference

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Plastid biotechnology: prospects for herbicide and insect resistance, metabolic engineering and molecular farming

1 reference

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Sequence of the tomato chloroplast DNA and evolutionary comparison of solanaceous plastid genomes

1 reference

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25 August 2018

Changes in Photosynthetic Capacity and Photosynthetic Protein Pattern during Tomato Fruit Ripening

1 reference

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25 August 2018

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

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25 August 2018

Chlamydomonas reinhardtii encodes a single sigma70-like factor which likely functions in chloroplast transcription.

1 reference

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25 August 2018

Specific function of a plastid sigma factor for ndhF gene transcription

1 reference

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The genomics of land plant chloroplasts: Gene content and alteration of genomic information by RNA editing.

1 reference

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25 August 2018

The tobacco plastid accD gene is essential and is required for leaf development.

1 reference

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25 August 2018

Chloroplast RNA processing and stability

1 reference

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Molecular farming for new drugs and vaccines. Current perspectives on the production of pharmaceuticals in transgenic plants

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Plastid transformation in higher plants

1 reference

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25 August 2018

Biogenesis of PSI involves a cascade of translational autoregulation in the chloroplast of Chlamydomonas

1 reference

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25 August 2018

A multiprotein complex involved in chloroplast group II intron splicing

1 reference

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Tissue- and stage-specific RNA editing of rps 14 transcripts in moss (Physcomitrella patens) chloroplasts.

1 reference

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MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

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Blue light-induced transcription of plastid-encoded psbD gene is mediated by a nuclear-encoded transcription initiation factor, AtSig5

1 reference

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Surprising features of plastid ndhD transcripts: addition of non-encoded nucleotides and polysome association of mRNAs with an unedited start codon

1 reference

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25 August 2018

Molecular genetic analysis of chloroplast gene promoters dependent on SIG2, a nucleus-encoded sigma factor for the plastid-encoded RNA polymerase, in Arabidopsis thaliana.

1 reference

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25 August 2018

Group II intron splicing factors derived by diversification of an ancient RNA-binding domain

1 reference

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25 August 2018

Identification of RNA editing sites in chloroplast transcripts from the maternal and paternal progenitors of tobacco (Nicotiana tabacum): comparative analysis shows the involvement of distinct trans-factors for ndhB editing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

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TM4: a free, open-source system for microarray data management and analysis

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25 August 2018

Translational regulations as specific traits of chloroplast gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

25 August 2018

Comparative analysis of plastid transcription profiles of entire plastid chromosomes from tobacco attributed to wild-type and PEP-deficient transcription machineries.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

25 August 2018

Searching limiting steps in the expression of chloroplast-encoded proteins: relations between gene copy number, transcription, transcript abundance and translation rate in the chloroplast of Chlamydomonas reinhardtii.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

25 August 2018

The amino acid sequence of a plastid protein is developmentally regulated by RNA editing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

25 August 2018

CRS1 is a novel group II intron splicing factor that was derived from a domain of ancient origin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

25 August 2018

Stable genetic transformation of tomato plastids and expression of a foreign protein in fruit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

25 August 2018

The ins and outs of group II introns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

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Identification of an RNA-protein complex involved in chloroplast group II intron trans-splicing in Chlamydomonas reinhardtii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

25 August 2018

Recruitment of a peptidyl-tRNA hydrolase as a facilitator of group II intron splicing in chloroplasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

25 August 2018

Complementarity of the 16S rRNA penultimate stem with sequences downstream of the AUG destabilizes the plastid mRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

25 August 2018

Photosynthetic electron flow regulates transcription of the psaB gene in pea (Pisum sativum L.) chloroplasts through the redox state of the plastoquinone pool

1 reference

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25 August 2018

Translation in chloroplasts.

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25 August 2018

Participation of nuclear genes in chloroplast gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

25 August 2018

Sense from nonsense: how the genetic information of chloroplasts is altered by RNA editing

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

25 August 2018

Regulation of rDNA transcription in plastids of higher plants

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

25 August 2018

The two largest chloroplast genome-encoded open reading frames of higher plants are essential genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

25 August 2018

A factor related to pseudouridine synthases is required for chloroplast group II intron trans-splicing in Chlamydomonas reinhardtii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

25 August 2018

Comparative analysis of splicing of the complete set of chloroplast group II introns in three higher plant mutants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

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Subpopulations of chloroplast ribosomes change during photoregulated development of Zea mays leaves: ribosomal proteins L2, L21, and L29

1 reference

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25 August 2018

Organellar RNA polymerases of higher plants

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Tissue-specific and light-dependent expression within a family of nuclear-encoded sigma-like factors from Zea mays.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

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Directed disruption of the tobacco ndhB gene impairs cyclic electron flow around photosystem I.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

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The chloroplast Ndh complex mediates the dark reduction of the plastoquinone pool in response to heat stress in tobacco leaves.

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Identification of a functional respiratory complex in chloroplasts through analysis of tobacco mutants containing disrupted plastid ndh genes

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Coordination of nuclear and chloroplast gene expression in plant cells.

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Mitochondrial and chloroplast phage-type RNA polymerases in Arabidopsis

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The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids

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Trans-activation of group II intron splicing by nuclear U5 snRNA.

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Nuclear mutations that block group II RNA splicing in maize chloroplasts reveal several intron classes with distinct requirements for splicing factors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

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Regulation of gene expression in chloroplasts of higher plants

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

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Nuclear encoding of a chloroplast RNA polymerase sigma subunit in a red alga.

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Deletion of rpoB reveals a second distinct transcription system in plastids of higher plants

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Occurrence of silent RNA editing in chloroplasts: its species specificity and the influence of environmental and developmental conditions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2390737

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High-frequency plastid transformation in tobacco by selection for a chimeric aadA gene

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Evolutionary relationships among group II intron-encoded proteins and identification of a conserved domain that may be related to maturase function

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Inefficient rpl2 splicing in barley mutants with ribosome-deficient plastids.

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Introduction of a heterologous editing site into the tobacco plastid genome: the lack of RNA editing leads to a mutant phenotype.

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Translational regulation of gene expression in chloroplasts and mitochondria

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RNA-binding activity of the matK protein encoded by the chloroplast trnK intron from mustard (Sinapis alba L.).

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25 August 2018

Genomic sequencing

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25 August 2018

The RNA required in the first step of chlorophyll biosynthesis is a chloroplast glutamate tRNA.

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Divergent mRNA transcription in the chloroplast psbB operon

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The chloroplast tRNALys(UUU) gene from mustard (Sinapis alba) contains a class II intron potentially coding for a maturase-related polypeptide

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25 August 2018

Two small open reading frames are co-transcribed with the pea chloroplast genes for the polypeptides of cytochrome b-559.

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25 August 2018

Comparative and functional anatomy of group II catalytic introns--a review

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25 August 2018

Cytochrome b-559 genes from Oenothera hookeri and Nicotiana tabacum show a remarkably high degree of conservation as compared to spinach. The enigma of cytochrome b-559: highly conserved genes and proteins but no known function

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25 August 2018

Alternative promoters are used for genes within maize chloroplast polycistronic transcription units

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25 August 2018

Two promoters within the psbK-psbI-trnG gene cluster in tobacco chloroplast DNA

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25 August 2018

Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes

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25 August 2018

Editing of a chloroplast mRNA by creation of an initiation codon

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25 August 2018

Active transcription from a promoter positioned within the coding region of a divergently oriented gene: the tobacco chloroplast rpl32 gene

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25 August 2018

The chloroplast genome

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25 August 2018

RNA editing in tobacco chloroplasts leads to the formation of a translatable psbL mRNA by a C to U substitution within the initiation codon

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25 August 2018

Internal editing of the maize chloroplast ndhA transcript restores codons for conserved amino acids

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Expression of a coriander desaturase results in petroselinic acid production in transgenic tobacco

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Identification of editing positions in thendhB transcript from maize chloroplasts reveals sequence similarities between editing sites of chloroplasts and plant mitochondria

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2 November 2018

RNA editing in an untranslated region of the Ginkgo chloroplast genome

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12 December 2020

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Targeted Inactivation of the PlastidndhBGene in Tobacco Results in an Enhanced Sensitivity of Photosynthesis to Moderate Stomatal Closure

1 reference

https://pubmed.ncbi.nlm.nih.gov/18441214

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18441214

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Plastidic RNA polymerase sigma factors in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/18441214

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Technical Advance: Stable chloroplast transformation in potato: use of green fluorescent protein as a plastid marker

1 reference

https://pubmed.ncbi.nlm.nih.gov/18441214

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Compartmentation of Acetyl-Coenzyme A Carboxylase in Plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/18441214

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cotranscription of the genes encoding two P700 chlorophyll a apoproteins with the gene for ribosomal protein CS14: determination of the transcriptional initiation site by in vitro capping

1 reference

https://pubmed.ncbi.nlm.nih.gov/18441214

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complex RNA maturation in chloroplasts. The psbB operon from spinach

1 reference

https://pubmed.ncbi.nlm.nih.gov/18441214

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Light-activated translation of chloroplast mRNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/18441214

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcript analysis of the tobacco plastid operon rps2/atpI/H/F/A reveals the existence of a non-consensus type II (NCII) promoter upstream of the atpI coding sequence

1 reference

https://pubmed.ncbi.nlm.nih.gov/18441214

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CRS1, a chloroplast group II intron splicing factor, promotes intron folding through specific interactions with two intron domains

1 reference

https://pubmed.ncbi.nlm.nih.gov/18441214

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chloroplast transformation with modified accD operon increases acetyl-CoA carboxylase and causes extension of leaf longevity and increase in seed yield in tobacco

1 reference

https://pubmed.ncbi.nlm.nih.gov/18441214

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An Arabidopsis sigma factor (SIG2)-dependent expression of plastid-encoded tRNAs in chloroplasts

1 reference

https://pubmed.ncbi.nlm.nih.gov/18441214

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1105/TPC.107.055202

1 reference

Europe PubMed Central

18 April 2018

http://europepmc.org/abstract/MED/18441214

0 references

1 reference

Europe PubMed Central

18 April 2018

http://europepmc.org/abstract/MED/18441214

ResearchGate publication ID

0 references

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