(Q52017405)

English

Conserved Noncoding Sequences among Cultivated Cereal Genomes Identify Candidate Regulatory Sequence Elements and Patterns of Promoter Evolution[W]

scientific article published on May 1, 2003

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scholarly article

1 reference

Europe PubMed Central

19 April 2018

http://europepmc.org/abstract/MED/12724540

Conserved Noncoding Sequences among Cultivated Cereal Genomes Identify Candidate Regulatory Sequence Elements and Patterns of Promoter Evolution[W] (English)

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most precise value

1 reference

10.1105/TPC.010181

https://api.crossref.org/works/10.1105/TPC.010181

29 December 2023

Conserved noncoding sequences among cultivated cereal genomes identify candidate regulatory sequence elements and patterns of promoter evolution (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12724540

29 December 2023

1 reference

10.1105/TPC.010181

https://api.crossref.org/works/10.1105/TPC.010181

29 December 2023

author name string

Hena Guo

1

1 reference

Europe PubMed Central

19 April 2018

http://europepmc.org/abstract/MED/12724540

Stephen P. Moose

2

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12724540

29 December 2023

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publication date

1 May 2003

1 reference

Europe PubMed Central

19 April 2018

http://europepmc.org/abstract/MED/12724540

full work available at URL

1 reference

Europe PubMed Central

19 April 2018

http://europepmc.org/abstract/MED/12724540

15

1 reference

Europe PubMed Central

19 April 2018

http://europepmc.org/abstract/MED/12724540

1143-1158

1 reference

Europe PubMed Central

19 April 2018

http://europepmc.org/abstract/MED/12724540

5

1 reference

Europe PubMed Central

19 April 2018

http://europepmc.org/abstract/MED/12724540

DNA sequences required for anaerobic expression of the maize alcohol dehydrogenase 1 gene.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

A significant fraction of conserved noncoding DNA in human and mouse consists of predicted matrix attachment regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Phylogenetic shadowing of primate sequences to find functional regions of the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Cross-species sequence comparisons: a review of methods and available resources

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Comparative sequence analysis of the sorghum Rph region and the maize Rp1 resistance gene complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Targeted analysis of orthologous phytochrome A regions of the sorghum, maize, and rice genomes using comparative gene-island sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Obtaining the sequence of the rice genome and lessons learned along the way.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Mosaic organization of orthologous sequences in grass genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Factors influencing the identification of transcription factor binding sites by cross-species comparison.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Rice as a model for comparative genomics of plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Maize DRE-binding proteins DBF1 and DBF2 are involved in rab17 regulation through the drought-responsive element in an ABA-dependent pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Utility and distribution of conserved noncoding sequences in the grasses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Enrichment of regulatory signals in conserved non-coding genomic sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Comparative genomics and regulatory evolution: conservation and function of the Chs and Apetala3 promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

The search for meaning in noncoding DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Arabidopsis and Brassica comparative genomics: sequence, structure and gene content in the ABI-Rps2-Ck1 chromosomal segment and related regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

VISTA : visualizing global DNA sequence alignments of arbitrary length

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Characterization of an iron-dependent regulatory sequence involved in the transcriptional control of AtFer1 and ZmFer1 plant ferritin genes by iron.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

DNA sequence evidence for the segmental allotetraploid origin of maize

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Active conservation of noncoding sequences revealed by three-way species comparisons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Comparative sequence analysis of plant nuclear genomes:m microcolinearity and its many exceptions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Genome relationships: the grass model in current research

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Cis-elements and trans-factors that regulate expression of the maize Cat1 antioxidant gene in response to ABA and osmotic stress: H2O2 is the likely intermediary signaling molecule for the response

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

PipMaker--a web server for aligning two genomic DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Identification of a Coordinate Regulator of Interleukins 4, 13, and 5 by Cross-Species Sequence Comparisons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

The complete sequence of 340 kb of DNA around the rice Adh1-adh2 region reveals interrupted colinearity with maize chromosome 4.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Constitutive protein-DNA interactions on the abscisic acid-responsive element before and after developmental activation of the rab28 gene.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Identification of cis-acting elements important for expression of the starch-branching enzyme I gene in maize endosperm.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Colinearity and its exceptions in orthologous adh regions of maize and sorghum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Functional genomics in Caenorhabditis elegans: An approach involving comparisons of sequences from related nematodes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Activation of the maize anthocyanin gene a2 is mediated by an element conserved in many anthocyanin promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Bayesian adaptive sequence alignment algorithms.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Sequence organization and conservation in sh2/a1-homologous regions of sorghum and rice.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

PAML: a program package for phylogenetic analysis by maximum likelihood

1 reference

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25 August 2018

A maize zinc-finger protein binds the prolamin box in zein gene promoters and interacts with the basic leucine zipper transcriptional activator Opaque2.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

The G-box: a ubiquitous regulatory DNA element in plants bound by the GBF family of bZIP proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Isolation of matrices from maize leaf nuclei: identification of a matrix-binding site adjacent to the Adh1 gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Promoter elements required for developmental expression of the maize Adh1 gene in transgenic rice.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

In vivo footprinting identifies an activating element of the maize Adh2 promoter specific for root and vascular tissues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Nucleotide sequence of a B1 hordein gene and the identification of possible upstream regulatory elements in endosperm storage protein genes from barley, wheat and maize

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Embryonic epsilon and gamma globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints.

1 reference

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25 August 2018

1 reference

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25 August 2018

Comparison of non-mutant and mutant waxy genes in rice and maize.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Molecular characterization of the gene encoding a rice endosperm-specific ADPglucose pyrophosphorylase subunit and its developmental pattern of transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

In vivo footprinting reveals unique cis-elements and different modes of hypoxic induction in maize Adh1 and Adh2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

The anaerobic responsive element contains two GC-rich sequences essential for binding a nuclear protien and hypoxic activation of the maizeAdh1promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=153722

25 August 2018

Evidence for direct activation of an anthocyanin promoter by the maize C1 protein and comparison of DNA binding by related Myb domain proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/12724540

12 December 2020

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inferred from PubMed ID database lookup

Constitutive and cell-division-inducible protein-DNA interactions in two maize histone gene promoters

1 reference

https://pubmed.ncbi.nlm.nih.gov/12724540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary History of the Grasses

1 reference

https://pubmed.ncbi.nlm.nih.gov/12724540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In vivo detection of regulatory factor binding sites in the 5' flanking region of maize Adh1

1 reference

https://pubmed.ncbi.nlm.nih.gov/12724540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional properties and regulatory complexity of a minimal RBCS light-responsive unit activated by phytochrome, cryptochrome, and plastid signals

1 reference

https://pubmed.ncbi.nlm.nih.gov/12724540

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inferred from PubMed ID database lookup

Using cauliflower to find conserved non-coding regions in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/12724540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular identification and isolation of the Waxy locus in maize

1 reference

https://pubmed.ncbi.nlm.nih.gov/12724540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification and molecular characterization of shrunken-2 cDNA clones of maize

1 reference

https://pubmed.ncbi.nlm.nih.gov/12724540

12 December 2020

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Sequence specificity of methylation in higher plant DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/12724540

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based on heuristic

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Grasses. a collective model genetic system

1 reference

https://pubmed.ncbi.nlm.nih.gov/12724540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1105/TPC.010181

1 reference

Europe PubMed Central

19 April 2018

http://europepmc.org/abstract/MED/12724540

0 references

1 reference

Europe PubMed Central

19 April 2018

http://europepmc.org/abstract/MED/12724540

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