(Q52593063)

4 May 2018

title

MODBASE, a database of annotated comparative protein structure models. (English)

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4 May 2018

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4 May 2018

author name string

Narayanan Eswar

2

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4 May 2018

Ashley C Stuart

3

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4 May 2018

Valentin A Ilyin

4

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4 May 2018

Andrej Sali

5

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4 May 2018

language of work or name

English

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publication date

1 January 2002

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4 May 2018

published in

Nucleic Acids Research

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4 May 2018

volume

30

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4 May 2018

issue

1

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4 May 2018

page(s)

255-259

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4 May 2018

Reliability of assessment of protein structure prediction methods.

cites work

1 reference

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22 May 2018

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EVA: continuous automatic evaluation of protein structure prediction servers.

22 May 2018

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Structure of the 80S ribosome from Saccharomyces cerevisiae--tRNA-ribosome and subunit-subunit interactions

22 May 2018

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Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis

22 May 2018

1 reference

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Protein structure prediction and structural genomics

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Genome annotation: from sequence to biology

22 May 2018

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Ab initio protein structure prediction: progress and prospects.

22 May 2018

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LiveBench-1: continuous benchmarking of protein structure prediction servers

22 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Homology-based annotation yields 1,042 new candidate genes in the Drosophila melanogaster genome

22 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

A database and tools for 3-D protein structure comparison and alignment using the Combinatorial Extension (CE) algorithm.

22 May 2018

1 reference

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Protein structure modeling for structural genomics.

22 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Comparative protein structure modeling of genes and genomes

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

The role of protein structure in genomics.

22 May 2018

1 reference

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Identification and characterization of a p53 homologue in Drosophila melanogaster

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

ModBase: a database of comparative protein structure models.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices

22 May 2018

1 reference

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Expectations from structural genomics

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Structural genomics and its importance for gene function analysis.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons

22 May 2018

1 reference

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The Pfam protein families database.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

MODBASE, a database of annotated comparative protein structure models

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

22 May 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

22 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Structural genomics: beyond the human genome project

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Functional insights from structural predictions: analysis of the Escherichia coli genome.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

A brighter future for protein structure prediction

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Large-scale protein structure modeling of the Saccharomyces cerevisiae genome

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Finding the genes in genomic DNA.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Homology-based fold predictions for Mycoplasma genitalium proteins.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Ligand specificity of brain lipid-binding protein

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

SRS: information retrieval system for molecular biology data banks

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Comparative protein modelling by satisfaction of spatial restraints

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Knowledge-Based Protein Modeling

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Recognition of errors in three-dimensional structures of proteins

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Packaging of proteases and proteoglycans in the granules of mast cells and other hematopoietic cells. A cluster of histidines on mouse mast cell protease 7 regulates its binding to heparin serglycin proteoglycans

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Assessment of protein models with three-dimensional profiles

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

Completeness in structural genomics.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

The CATH Dictionary of Homologous Superfamilies (DHS): a consensus approach for identifying distant structural homologues.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99112

100,000 protein structures for the biologist

13 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11752309

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Protein modelling for all

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11752309

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Protein structural alignments and functional genomics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11752309

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/30.1.255

1 reference

4 May 2018

journals/nar/PieperESIS03

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

4 May 2018

PubMed ID

11752309

1 reference

4 May 2018