(Q52649360)

5 May 2018

title

Rapid communication capturing the destabilizing effect of dihydrouridine through molecular simulations. (English)

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5 May 2018

author

Lennart Nilsson

3

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5 May 2018

Ansuman Lahiri

object named as

Ansuman Lahiri

4

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author name string

Indrajit Deb

1

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5 May 2018

Joanna Sarzynska

2

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5 May 2018

publication date

1 October 2014

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5 May 2018

published in

Biopolymers

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5 May 2018

volume

101

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5 May 2018

issue

10

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5 May 2018

page(s)

985-991

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The RNA Modification Database, RNAMDB: 2011 update

cites work

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Posttranscriptional modification of tRNA in psychrophilic bacteria

21 January 2018

1 reference

Conformational flexibility in RNA: the role of dihydrouridine

21 January 2018

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Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers

21 January 2018

1 reference

Force field parameters for rotation around chi torsion axis in nucleic acids

21 January 2018

1 reference

Reparameterization of RNA chi Torsion Parameters for the AMBER Force Field and Comparison to NMR Spectra for Cytidine and Uridine.

21 January 2018

1 reference

Impact of 2'-hydroxyl sampling on the conformational properties of RNA: update of the CHARMM all-atom additive force field for RNA.

21 January 2018

1 reference

Benchmarking AMBER force fields for RNA: comparisons to NMR spectra for single-stranded r(GACC) are improved by revised χ torsions

21 January 2018

1 reference

Refinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles

21 January 2018

1 reference

Revision of AMBER Torsional Parameters for RNA Improves Free Energy Predictions for Tetramer Duplexes with GC and iGiC Base Pairs

21 January 2018

1 reference

High-resolution reversible folding of hyperstable RNA tetraloops using molecular dynamics simulations

21 January 2018

1 reference

The nuclear magnetic resonance of CCCC RNA reveals a right-handed helix, and revised parameters for AMBER force field torsions improve structural predictions from molecular dynamics

21 January 2018

1 reference

Conformational properties of dinucleoside monophosphates in solution: dipurines and dipyrimidines

21 January 2018

1 reference

Conformational properties of purine-pyrimidine and pyrimidine-purine dinucleoside monophosphates

21 January 2018

1 reference

The geometry of nucleic acids

21 January 2018

1 reference

Structure and dynamics of the ApA, ApC, CpA, and CpC RNA dinucleoside monophosphates resolved with NMR scalar spin-spin couplings.

21 January 2018

1 reference

Conformation studies of 13 trinucleoside diphosphates by 360 MHz PMR spectroscopy. A bulged base conformation. I. Base protons and H1' protons

21 January 2018

1 reference

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

1 reference

Finding and visualizing nucleic acid base stacking.

21 January 2018

1 reference

Toward a Full Characterization of Nucleic Acid Components in Aqueous Solution: Simulations of Nucleosides

21 January 2018

1 reference

Performance of Molecular Mechanics Force Fields for RNA Simulations: Stability of UUCG and GNRA Hairpins

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/BIP.22495

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5 May 2018

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5 May 2018