(Q52684337)

English

Effect of divergence time and recombination rate on molecular evolution of Drosophila INE-1 transposable elements and other candidates for neutrally evolving sites.

scientific article published on 25 September 2007

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17896069%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

Effect of divergence time and recombination rate on molecular evolution of Drosophila INE-1 transposable elements and other candidates for neutrally evolving sites (English)

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17896069%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

1

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17896069%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

Daniel L Halligan

3

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17896069%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

author name string

Peter D Keightley

2

1 reference

Europe PubMed Central

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8 January 2020

publication date

25 September 2007

1 reference

Europe PubMed Central

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8 January 2020

Journal of Molecular Evolution

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17896069%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

65

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Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17896069%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

6

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17896069%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

627-639

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17896069%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

https://scigraph.springernature.com/pub.10.1007/s00239-007-9028-6

0 references

Intraspecific nuclear DNA variation in Drosophila

1 reference

https://api.crossref.org/works/10.1007%2FS00239-007-9028-6

21 January 2018

The effect of linkage on limits to artificial selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Background selection and patterns of genetic diversity in Drosophila melanogaster

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The hitch-hiking effect of a favourable gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recombination has little effect on the rate of sequence divergence in pseudoautosomal boundary 1 among humans and great apes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The distribution of transposable elements within and between chromosomes in a population of Drosophila melanogaster. I. Element frequencies and distribution

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparison of dot chromosome sequences from D. melanogaster and D. virilis reveals an enrichment of DNA transposon sequences in heterochromatic domains

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reduced efficacy of selection in regions of the Drosophila genome that lack crossing over

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rapid generation of nested chromosomal deletions on mouse chromosome 2.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mobile elements and mammalian genome evolution.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution and consequences of transposable elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synonymous substitution rates in Drosophila: mitochondrial versus nuclear genes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rapid sequence turnover at an intergenic locus in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inferring parameters of mutation, selection and demography from patterns of synonymous site evolution in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MCALIGN2: faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural basis for bacterial transcription-coupled DNA repair.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The population genetics of Drosophila transposable elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A study of ten families of transposable elements on X chromosomes from a population of Drosophila melanogaster

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Combined evidence annotation of transposable elements in genome sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Human SNP variability and mutation rate are higher in regions of high recombination

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recombination enhances protein adaptation in Drosophila melanogaster

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolutionary advantage of recombination

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mammalian retroelements.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reduced natural selection associated with low recombination in Drosophila melanogaster.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The "hitchhiking effect" revisited

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Initial sequencing and comparative analysis of the mouse genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomewide comparative analysis of the highly abundant transposable element DINE-1 suggests a recent transpositional burst in Drosophila yakuba

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Penelope retroelements from Drosophila virilis are active after transformation of Drosophila melanogaster

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Patterns of genetic variation at a chromosome 4 locus of Drosophila melanogaster and D. simulans

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular paleontology of transposable elements in the Drosophila melanogaster genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Maintenance of pre-mRNA secondary structure by epistatic selection.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ingrowth by photoreceptor axons induces transcription of a retrotransposon in the developing Drosophila brain.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Retrotransposons provide an evolutionarily robust non-telomerase mechanism to maintain telomeres

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic selective constraints in murid noncoding DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Correlated evolution of synonymous and nonsynonymous sites in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Sequence of the Human Genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic heterogeneity of background substitutional patterns in Drosophila melanogaster

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Linkage limits the power of natural selection in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Origin of a substantial fraction of human regulatory sequences from transposable elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mobile elements: drivers of genome evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Type I (R1) and type II (R2) ribosomal DNA insertions of Drosophila melanogaster are retrotransposable elements closely related to those of Bombyx mori

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Patterns of nucleotide substitution in Drosophila and mammalian genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Retrotransposons in the flanking regions of normal plant genes: a role for copia-like elements in the evolution of gene structure and expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MAVID: constrained ancestral alignment of multiple sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Adaptive genic evolution in the Drosophila genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon bias and noncoding GC content correlate negatively with recombination rate on the Drosophila X chromosome

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interactions between natural selection, recombination and gene density in the genes of Drosophila.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Neutral Explanation for the Correlation of Diversity with Recombination Rates in Humans

1 reference

https://pubmed.ncbi.nlm.nih.gov/17896069

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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