(Q52710198)

English

Intronic AT skew is a defendable proxy for germline transcription but does not predict crossing-over or protein evolution rates in Drosophila melanogaster.

scientific article published on 12 October 2010

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

6 May 2018

http://europepmc.org/abstract/MED/20938653

Intronic AT skew is a defendable proxy for germline transcription but does not predict crossing-over or protein evolution rates in Drosophila melanogaster. (English)

1 reference

Europe PubMed Central

PubMed publication ID

6 May 2018

http://europepmc.org/abstract/MED/20938653

Drosophila melanogaster

0 references

protein evolution

0 references

Claudia C Weber

1

1 reference

Europe PubMed Central

PubMed publication ID

6 May 2018

http://europepmc.org/abstract/MED/20938653

Laurence D. Hurst

2

1 reference

Europe PubMed Central

PubMed publication ID

6 May 2018

http://europepmc.org/abstract/MED/20938653

publication date

12 October 2010

1 reference

Europe PubMed Central

PubMed publication ID

6 May 2018

http://europepmc.org/abstract/MED/20938653

Journal of Molecular Evolution

1 reference

Europe PubMed Central

PubMed publication ID

6 May 2018

http://europepmc.org/abstract/MED/20938653

71

1 reference

Europe PubMed Central

PubMed publication ID

6 May 2018

http://europepmc.org/abstract/MED/20938653

5-6

1 reference

Europe PubMed Central

PubMed publication ID

6 May 2018

http://europepmc.org/abstract/MED/20938653

415-426

1 reference

Europe PubMed Central

PubMed publication ID

6 May 2018

http://europepmc.org/abstract/MED/20938653

https://scigraph.springernature.com/pub.10.1007/s00239-010-9395-2

0 references

Splicing and the evolution of proteins in mammals

1 reference

https://api.crossref.org/works/10.1007%2FS00239-010-9395-2

21 January 2018

Local changes in GC/AT substitution biases and in crossover frequencies on Drosophila chromosomes

1 reference

https://api.crossref.org/works/10.1007%2FS00239-010-9395-2

21 January 2018

Human gene organization driven by the coordination of replication and transcription.

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene expression, synteny, and local similarity in human noncoding mutation rates.

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein rates of evolution are predicted by double-strand break events, independent of crossing-over rates

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dependence of mutational asymmetry on gene-expression levels in the human genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for large domains of similarly expressed genes in the Drosophila genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Biased gene conversion and the evolution of mammalian genomic landscapes

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Meiosis-induced double-strand break sites determined by yeast chromatin structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distinct histone modifications define initiation and repair of meiotic recombination in the mouse

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conservation of neutral substitution rate and substitutional asymmetries in mammalian genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Highly expressed genes in yeast evolve slowly.

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Global chromatin domain organization of the Drosophila genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Impacts of gene essentiality, expression pattern, and gene compactness on the evolutionary rate of mammalian proteins.

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for a preferential targeting of 3'-UTRs by cis-encoded natural antisense transcripts

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Using FlyAtlas to identify better Drosophila melanogaster models of human disease

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A chromatin landmark and transcription initiation at most promoters in human cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of a finite population under gene conversion

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Clustering of housekeeping genes provides a unified model of gene order in the human genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A comparative analysis of divergently-paired genes (DPGs) among Drosophila and vertebrate genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of protein-coding genes in Drosophila.

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Constraint and turnover in sex-biased gene expression in the genus Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for a trade-off between translational efficiency and splicing regulation in determining synonymous codon usage in Drosophila melanogaster

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription-associated mutational asymmetry in mammalian evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Elevated levels of expression associated with regions of the Drosophila genome that lack crossing over

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Neutral effect of recombination on base composition in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reduced effectiveness of selection caused by a lack of recombination.

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mechanisms of transcription-coupled DNA repair

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription induces strand-specific mutations at the 5' end of human genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HapMap methylation-associated SNPs, markers of germline DNA methylation, positively correlate with regional levels of human meiotic recombination

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolution of isochores

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recombination enhances protein adaptation in Drosophila melanogaster

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular evolution of sex-biased genes in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic signatures of germline gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Finding exonic islands in a sea of non-coding sequence: splicing related constraints on protein composition and evolution are common in intron-rich genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The relationship between DNA replication and human genome organization

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein evolution and codon usage bias on the neo-sex chromosomes of Drosophila miranda.

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fine-scale mapping of recombination rate in Drosophila refines its correlation to diversity and divergence

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A positive but complex association between meiotic double-strand break hotspots and open chromatin in Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hotspots of biased nucleotide substitutions in human genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Non-neutral processes drive the nucleotide composition of non-coding sequences in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Monoallelic expression and tissue specificity are associated with high crossover rates

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Selective and mutational patterns associated with gene expression in humans: influences on synonymous composition and intron presence

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for variation in abundance of antisense transcripts between multicellular animals but no relationship between antisense transcriptionand organismic complexity

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates.

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of codon usage bias in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High-resolution mapping of meiotic crossovers and non-crossovers in yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Estimation of fine-scale recombination intensity variation in the white-echinus interval of D. melanogaster

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Linkage limits the power of natural selection in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positive correlation between evolutionary rate and recombination rate in Drosophila genes with male-biased expression.

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites.

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Replication-associated strand asymmetries in mammalian genomes: toward detection of replication origins

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interactions between natural selection, recombination and gene density in the genes of Drosophila.

1 reference

https://pubmed.ncbi.nlm.nih.gov/20938653

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00239-010-9395-2

1 reference

Europe PubMed Central

PubMed publication ID

6 May 2018

http://europepmc.org/abstract/MED/20938653

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

6 May 2018

http://europepmc.org/abstract/MED/20938653

ResearchGate publication ID

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