(Q53019438)

10 May 2018

title

Artifactual phylogenies caused by correlated distribution of substitution rates among sites and lineages: the good, the bad, and the ugly. (English)

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10 May 2018

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2

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10 May 2018

Valentin Ruano Rubio

series ordinal

1

object named as

Valentin Ruano-Rubio

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10 May 2018

publication date

1 February 2007

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10 May 2018

published in

Systematic Biology

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10 May 2018

volume

56

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10 May 2018

issue

1

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10 May 2018

page(s)

68-82

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10 May 2018

Covarion structure in plastid genome evolution: a new statistical test

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An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics.

21 January 2018

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Archaea sister group of Bacteria? Indications from tree reconstruction artifacts in ancient phylogenies

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Inconsistency of evolutionary tree topology reconstruction methods when substitution rates vary across characters

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PAL: an object-oriented programming library for molecular evolution and phylogenetics.

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An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution

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Modeling compositional heterogeneity

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Maximum Likelihood Outperforms Maximum Parsimony Even When Evolutionary Rates Are Heterotachous

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Maximum-likelihood phylogenetic analysis under a covarion-like model.

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Maximum-likelihood approach for gene family evolution under functional divergence.

21 January 2018

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Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1alpha phylogenies.

21 January 2018

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Large-scale phylogenies and measuring the performance of phylogenetic estimators

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Slicing hyperdimensional oranges: the geometry of phylogenetic estimation.

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Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea

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A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins

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Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

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A covariotide model explains apparent phylogenetic structure of oxygenic photosynthetic lineages.

21 January 2018

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Heterotachy, an important process of protein evolution

21 January 2018

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The root of the tree of life in the light of the covarion model

21 January 2018

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Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superior

21 January 2018

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The evolution of base composition and phylogenetic inference

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Mathematical elegance with biochemical realism: the covarion model of molecular evolution

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Heterotachy and long-branch attraction in phylogenetics

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Identifying and removing fast-evolving sites using compatibility analysis: an example from the Arthropoda

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A fast algorithm for joint reconstruction of ancestral amino acid sequences

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Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment

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Testing for differences in rates-across-sites distributions in phylogenetic subtrees.

21 January 2018

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On inconsistency of the neighbor-joining, least squares, and minimum evolution estimation when substitution processes are incorrectly modeled.

21 January 2018

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Biases in phylogenetic estimation can be caused by random sequence segments.

21 January 2018

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Modeling the covarion hypothesis of nucleotide substitution.

21 January 2018

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Fitting Discrete Probability Distributions to Evolutionary Events

21 January 2018

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Testing a covariotide model of DNA substitution

21 January 2018

1 reference

5 June 2022

https://opencitations.net/index/coci/api/v1/citations/10.1093/OXFORDJOURNALS.MOLBEV.A004128

Identifiers

DOI

10.1080/10635150601175578

1 reference

10 May 2018

1 reference

10 May 2018