(Q53038887)

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The mitochondrial genome of a deep-sea bamboo coral (Cnidaria, Anthozoa, Octocorallia, Isididae): genome structure and putative origins of replication are not conserved among octocorals.

scientific article published on 28 May 2008

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

10 May 2018

http://europepmc.org/abstract/MED/18506498

The mitochondrial genome of a deep-sea bamboo coral (Cnidaria, Anthozoa, Octocorallia, Isididae): genome structure and putative origins of replication are not conserved among octocorals. (English)

1 reference

Europe PubMed Central

PubMed publication ID

10 May 2018

http://europepmc.org/abstract/MED/18506498

0 references

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object named as

Isididae

1 reference

based on heuristic

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author name string

Mercer R Brugler

1

1 reference

Europe PubMed Central

PubMed publication ID

10 May 2018

http://europepmc.org/abstract/MED/18506498

Scott C France

2

1 reference

Europe PubMed Central

PubMed publication ID

10 May 2018

http://europepmc.org/abstract/MED/18506498

publication date

28 May 2008

1 reference

Europe PubMed Central

PubMed publication ID

10 May 2018

http://europepmc.org/abstract/MED/18506498

Journal of Molecular Evolution

1 reference

Europe PubMed Central

PubMed publication ID

10 May 2018

http://europepmc.org/abstract/MED/18506498

67

1 reference

Europe PubMed Central

PubMed publication ID

10 May 2018

http://europepmc.org/abstract/MED/18506498

2

1 reference

Europe PubMed Central

PubMed publication ID

10 May 2018

http://europepmc.org/abstract/MED/18506498

125-136

1 reference

Europe PubMed Central

PubMed publication ID

10 May 2018

http://europepmc.org/abstract/MED/18506498

https://scigraph.springernature.com/pub.10.1007/s00239-008-9116-2

0 references

Replication and Transcription of Vertebrate Mitochondrial DNA

1 reference

https://api.crossref.org/works/10.1007%2FS00239-008-9116-2

21 January 2018

Evolutionary dynamics of a mitochondrial rearrangement "hot spot" in the Hymenoptera

1 reference

https://api.crossref.org/works/10.1007%2FS00239-008-9116-2

21 January 2018

Phylogenetic relationships in the coral family acroporidae, reassessed by inference from mitochondrial genes

1 reference

https://api.crossref.org/works/10.1007%2FS00239-008-9116-2

21 January 2018

Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome

1 reference

https://api.crossref.org/works/10.1007%2FS00239-008-9116-2

21 January 2018

Asymmetrical directional mutation pressure in the mitochondrial genome of mammals.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-008-9116-2

21 January 2018

Numerous gene rearrangements in the mitochondrial genome of the wallaby louse, Heterodoxus macropus (Phthiraptera).

1 reference

https://api.crossref.org/works/10.1007%2FS00239-008-9116-2

21 January 2018

The mitochondrial genome of Acropora tenuis (Cnidaria; Scleractinia) contains a large group I intron and a candidate control region

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

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The complete mitochondrial genomes of needle corals, Seriatopora spp. (Scleractinia: Pocilloporidae): an idiosyncratic atp8, duplicated trnW gene, and hypervariable regions used to determine species phylogenies and recently diverged populations

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

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Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

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DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Big trees from little genomes: mitochondrial gene order as a phylogenetic tool

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

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The contributions of replication orientation, gene direction, and signal sequences to base-composition asymmetries in bacterial genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

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Gene arrangement in sea star mitochondrial DNA demonstrates a major inversion event during echinoderm evolution.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

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Key transitions in animal evolution: a mitochondrial DNA perspective.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

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Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of metazoa, and consequences for phylogenetic inferences

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

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Two mitochondrial group I introns in a metazoan, the sea anemone Metridium senile: one intron contains genes for subunits 1 and 3 of NADH dehydrogenase

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence analysis of the mitochondrial genome of Sarcophyton glaucum: conserved gene order among octocorals

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A molecular phylogenetic analysis of the Octocorallia (Cnidaria: Anthozoa) based on mitochondrial protein-coding sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete mitochondrial DNA sequence of the Australian freshwater crayfish, Cherax destructor (Crustacea: Decapoda: Parastacidae): a novel gene order revealed.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dual recognition–incision enzymes might be involved in mismatch repair and meiosis

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tandem repeats finder: a program to analyze DNA sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Naked corals: skeleton loss in Scleractinia

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Novel group I introns encoding a putative homing endonuclease in the mitochondrial cox1 gene of Scleractinian corals

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Replication of animal mitochondrial DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GraphDNA: a Java program for graphical display of DNA composition analyses

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mitochondrial DNA replication: what we know

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Origin and direction of replication in mitochondrial DNA molecules from the genus Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analyzing DNA strand compositional asymmetry to identify candidate replication origins of Borrelia burgdorferi linear and circular plasmids

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A simple vectorial representation of DNA sequences for the detection of replication origins in bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mitochondrial genome dynamics in plants and animals: convergent gene fusions of a MutS homologue

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequences with the potential to form stem-and-loop structures are associated with coding-region duplications in animal mitochondrial DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Strand compositional asymmetry in bacterial and large viral genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

EMBOSS: the European Molecular Biology Open Software Suite

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Intramitochondrial recombination - is it why some mitochondrial genes sleep around?

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Variation in coding (NADH dehydrogenase subunits 2, 3, and 6) and noncoding intergenic spacer regions of the mitochondrial genome in Octocorallia (Cnidaria: Anthozoa)

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The complete mitochondrial genome of the black coral Chrysopathes formosa (Cnidaria:Anthozoa:Antipatharia) supports classification of antipatharians within the subclass Hexacorallia

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A hotspot of gene order rearrangement by tandem duplication and random loss in the vertebrate mitochondrial genome.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inverted repeats, stem-loops, and cruciforms: significance for initiation of DNA replication

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The mitochondrial genome of Pocillopora (Cnidaria: Scleractinia) contains two variable regions: the putative D-loop and a novel ORF of unknown function

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Invasion and persistence of a selfish gene in the Cnidaria

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The phylogeny of echinoderm classes based on mitochondrial gene arrangements

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The mitochondrial genome of Hydra oligactis (Cnidaria, Hydrozoa) sheds new light on animal mtDNA evolution and cnidarian phylogeny

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mitochondrial genome of Savalia savaglia (Cnidaria, Hexacorallia) and early metazoan phylogeny

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tandem duplications in animal mitochondrial DNAs: variation in incidence and gene content among lizards

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Replication origin of mitochondrial DNA in insects

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria).

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polymorphism in Nucleotide Sequence of Mitochondrial Intergenic Region in Scleractinian Coral (Galaxea fascicularis)

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The mitochondrial genome of the honeybee Apis mellifera: complete sequence and genome organization

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Animal mitochondrial DNA recombination.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA sequence variation of mitochondrial large-subunit rRNA provides support for a two-subclass organization of the Anthozoa (Cnidaria).

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Variations in mitochondrial tRNA gene organization of reptiles as phylogenetic markers.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Human mtDNA sublimons resemble rearranged mitochondrial genoms found in pathological states

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mitochondrial DNA of the coral Sarcophyton glaucum contains a gene for a homologue of bacterial MutS: a possible case of gene transfer from the nucleus to the mitochondrion

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Drosophila mitochondrial genome.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Replication slippage involves DNA polymerase pausing and dissociation

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Replication-associated strand asymmetries in mammalian genomes: toward detection of replication origins

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular mechanisms of extensive mitochondrial gene rearrangement in plethodontid salamanders

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Animal mitochondrial DNA: structure and evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mfold web server for nucleic acid folding and hybridization prediction

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

tRNA punctuation model of RNA processing in human mitochondria

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence-specific pausing during in vitro DNA replication on double-stranded DNA templates.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18506498

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00239-008-9116-2

1 reference

Europe PubMed Central

PubMed publication ID

10 May 2018

http://europepmc.org/abstract/MED/18506498

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

10 May 2018

http://europepmc.org/abstract/MED/18506498

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