(Q53852416)

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Intimate View of a Kinetic Protein Folding Intermediate: Residue-resolved Structure, Interactions, Stability, Folding and Unfolding Rates, Homogeneity

scientific article published on November 28, 2003

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Europe PubMed Central

PubMed publication ID

21 May 2018

http://europepmc.org/abstract/MED/14623190

Intimate View of a Kinetic Protein Folding Intermediate: Residue-resolved Structure, Interactions, Stability, Folding and Unfolding Rates, Homogeneity (English)

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10.1016/J.JMB.2003.09.070

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protein folding

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protein structure

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structural biology

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author name string

Yan Lin

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21 May 2018

http://europepmc.org/abstract/MED/14623190

Leland Mayne

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Europe PubMed Central

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21 May 2018

http://europepmc.org/abstract/MED/14623190

Mallela M. G. Krishna

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14623190

3 April 2024

S. Walter Englander

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1 November 2003

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21 May 2018

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28 November 2003

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3 April 2024

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10.1016/J.JMB.2003.09.070

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Journal of Molecular Biology

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Europe PubMed Central

PubMed publication ID

21 May 2018

http://europepmc.org/abstract/MED/14623190

334

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21 May 2018

http://europepmc.org/abstract/MED/14623190

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Europe PubMed Central

PubMed publication ID

21 May 2018

http://europepmc.org/abstract/MED/14623190

501-513

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Europe PubMed Central

PubMed publication ID

21 May 2018

http://europepmc.org/abstract/MED/14623190

Navigating the folding routes

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Theoretical studies of protein-folding thermodynamics and kinetics

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From Levinthal to pathways to funnels

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Sequential vs. parallel protein-folding mechanisms: experimental tests for complex folding reactions

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Are there pathways for protein folding?

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Intermediates in the folding reactions of small proteins

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Protein folding intermediates and pathways studied by hydrogen exchange

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Structural characterization of folding intermediates in cytochrome c by H-exchange labelling and proton NMR.

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NMR evidence for an early framework intermediate on the folding pathway of ribonuclease A

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Early folding intermediate of ribonuclease A.

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Protein folding studied using hydrogen-exchange labeling and two-dimensional NMR

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Understanding how proteins fold: the lysozyme story so far.

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Insights into protein folding from NMR.

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The hydrogen exchange core and protein folding.

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Protein folding intermediates: native-state hydrogen exchange

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Future directions in folding: the multi-state nature of protein structure

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Comparison of equilibrium and kinetic approaches for determining protein folding mechanisms

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Evidence for an unfolding and refolding pathway in cytochrome c

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Experimental study of the protein folding landscape: unfolding reactions in cytochrome c.

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Kinetic evidence for an on-pathway intermediate in the folding of cytochrome c.

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An amino acid code for protein folding

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Cytochrome c folding pathway: kinetic native-state hydrogen exchange

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Cooperative omega loops in cytochrome c: role in folding and function

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Evidence for barrier-limited protein folding kinetics on the microsecond time scale

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Fast and slow intermediate accumulation and the initial barrier mechanism in protein folding

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Stepwise formation of alpha-helices during cytochrome c folding

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Kinetic mechanism of cytochrome c folding: involvement of the heme and its ligands

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The barriers in protein folding

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A kinetic explanation for the rearrangement pathway of BPTI folding

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Molecular collapse: the rate-limiting step in two-state cytochrome c folding

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Folding mechanism of the alpha-subunit of tryptophan synthase, an alpha/beta barrel protein: global analysis highlights the interconversion of multiple native, intermediate, and unfolded forms through parallel channels

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Folding of horse cytochrome c in the reduced state

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Nature of the fast and slow refolding reactions of iron(III) cytochrome c

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1 reference

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Slow refolding kinetics in yeast iso-2 cytochrome c.

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Replacement of a conserved proline eliminates the absorbance-detected slow folding phase of iso-2-cytochrome c

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Intermolecular aggregations are responsible for the slow kinetics observed in the folding of cytochrome c at neutral pH

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Primary structure effects on peptide group hydrogen exchange

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Isotope effects in peptide group hydrogen exchange

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1 reference

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Folding units govern the cytochrome c alkaline transition

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1 reference

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Kinetics and thermodynamics of conformational equilibria in native proteins by hydrogen exchange

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1 reference

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Im7 folding mechanism: misfolding on a path to the native state

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Specific non-native hydrophobic interactions in a hidden folding intermediate: implications for protein folding

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1 reference

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Folding of immunogenic peptide fragments of proteins in water solution. I. Sequence requirements for the formation of a reverse turn

49

1 reference

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Sequence requirements for stabilization of a peptide reverse turn in water solution--proline is not essential for stability

50

1 reference

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Side chain packing of the N- and C-terminal helices plays a critical role in the kinetics of cytochrome c folding

51

1 reference

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Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions.

54

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

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Helix Propensities of Basic Amino Acids Increase with the Length of the Side-chain

55

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

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Elucidating the folding problem of helical peptides using empirical parameters

56

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

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57

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

3 April 2024

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58

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

3 April 2024

Determination of the rate constants k1 and k2 of the Linderström-Lang model for protein amide hydrogen exchange. A study of the individual amides in hen egg-white lysozyme

59

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

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Microsecond to minute dynamics revealed by EX1-type hydrogen exchange at nearly every backbone hydrogen bond in a native protein

60

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

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Local cooperativity in the unfolding of an amyloidogenic variant of human lysozyme

61

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

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62

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

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Kinetics of unfolding and folding from amide hydrogen exchange in native ubiquitin

63

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

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Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

64

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

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65

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

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66

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

3 April 2024

Side-chain dynamics and protein folding.

67

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

3 April 2024

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68

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

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D/H amide kinetic isotope effects reveal when hydrogen bonds form during protein folding

69

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

3 April 2024

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70

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

3 April 2024

Chaperonin function: folding by forced unfolding

71

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

3 April 2024

Three-state model for lysozyme folding: triangular folding mechanism with an energetically trapped intermediate

72

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

3 April 2024

Parallel channels and rate-limiting steps in complex protein folding reactions: prolyl isomerization and the alpha subunit of Trp synthase, a TIM barrel protein

73

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

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Submolecular cooperativity produces multi-state protein unfolding and refolding

74

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

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75

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

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Hydrogen Exchange in Proteins

77

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

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Hydrogen exchange methods to study protein folding

78

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

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High-resolution three-dimensional structure of horse heart cytochrome c

80

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

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MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

81

1 reference

10.1016/J.JMB.2003.09.070

https://api.crossref.org/works/10.1016/J.JMB.2003.09.070

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10.1016/J.JMB.2003.09.070

1 reference

Europe PubMed Central

PubMed publication ID

21 May 2018

http://europepmc.org/abstract/MED/14623190

PubMed publication ID

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Europe PubMed Central

PubMed publication ID

21 May 2018

http://europepmc.org/abstract/MED/14623190

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