(Q54378996)

29 May 2018

title

Conformational dynamics of supramolecular protein assemblies (English)

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

16 July 2024

author name string

Do-Nyun Kim

1

1 reference

29 May 2018

Cong-Tri Nguyen

2

1 reference

29 May 2018

Mark Bathe

3

1 reference

29 May 2018

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20854912

16 July 2024

publication date

18 September 2010

1 reference

29 May 2018

full work available at URL

https://dspace.mit.edu/bitstream/1721.1/108611/1/KimDN%20JSB%20Final%20Revision.pdf

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20854912

https://api.elsevier.com/content/article/PII:S1047847710002844?httpAccept=text/xml

16 July 2024

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

https://api.elsevier.com/content/article/PII:S1047847710002844?httpAccept=text/plain

16 July 2024

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Journal of Structural Biology

16 July 2024

published in

1 reference

29 May 2018

volume

173

1 reference

29 May 2018

issue

2

1 reference

29 May 2018

page(s)

261-270

1 reference

29 May 2018

Normal modes for predicting protein motions: a comprehensive database assessment and associated Web tool

cites work

1

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Coarse-grained normal mode analysis in structural biology

16 July 2024

2

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

A finite element framework for computation of protein normal modes and mechanical response

16 July 2024

4

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Nuclear Pore Complex Structure and Dynamics Revealed by Cryoelectron Tomography

16 July 2024

7

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Snapshots of nuclear pore complexes in action captured by cryo-electron tomography

16 July 2024

8

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Vibrational normal-mode spectrum of globular proteins

16 July 2024

9

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

16 July 2024

The Protein Data Bank

10

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

The Protein Data Bank: a computer-based archival file for macromolecular structures

16 July 2024

11

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Experimental verification of conformational variation of human fatty acid synthase as predicted by normal mode analysis.

16 July 2024

12

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

VIPERdb2: an enhanced and web API enabled relational database for structural virology

16 July 2024

14

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Mega-Dalton Biomolecular Motion Captured from Electron Microscopy Reconstructions

16 July 2024

15

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Virus maturation involving large subunit rotations and local refolding

16 July 2024

17

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Proteomic analysis of the mammalian nuclear pore complex

16 July 2024

18

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Induced fit, conformational selection and independent dynamic segments: an extended view of binding events

16 July 2024

19

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Allostery and cooperativity revisited

16 July 2024

21

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Conformational changes in the chaperonin GroEL: new insights into the allosteric mechanism

16 July 2024

22

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Structural analysis of the nuclear pore complex by integrated approaches.

16 July 2024

23

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Average protein density is a molecular-weight-dependent function.

16 July 2024

25

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Nonlinear finite-element analysis of nanoindentation of viral capsids

16 July 2024

27

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Influence of nonuniform geometry on nanoindentation of viral capsids

16 July 2024

28

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Gaussian Dynamics of Folded Proteins

16 July 2024

29

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Computational cluster validation in post-genomic data analysis

16 July 2024

30

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

EMDep: a web-based system for the deposition and validation of high-resolution electron microscopy macromolecular structural information

16 July 2024

31

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

WEBnm@: a web application for normal mode analyses of proteins

16 July 2024

32

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Dynamics of allosteric transitions in GroEL.

16 July 2024

33

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Collective motions in proteins: A covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations

16 July 2024

34

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

A tripeptide 'anticodon' deciphers stop codons in messenger RNA.

16 July 2024

35

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Nuclear envelope barrier leak induced by dexamethasone.

16 July 2024

36

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Protein compressibility, dynamics, and pressure

16 July 2024

37

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

An elastic network model of HK97 capsid maturation

16 July 2024

38

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Rigid-cluster models of conformational transitions in macromolecular machines and assemblies

16 July 2024

39

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Structure of the Escherichia coli ribosomal termination complex with release factor 2

16 July 2024

40

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Generalized correlation for biomolecular dynamics

16 July 2024

41

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Global motions of the nuclear pore complex: insights from elastic network models

16 July 2024

42

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis

16 July 2024

43

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Marching cubes: A high resolution 3D surface construction algorithm

16 July 2024

44

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

A 11.5 A single particle reconstruction of GroEL using EMAN

16 July 2024

45

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

The allosteric mechanism of the chaperonin GroEL: a dynamic analysis

16 July 2024

46

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Release factors eRF1 and RF2: a universal mechanism controls the large conformational changes

16 July 2024

47

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Transport into and out of the nucleus

16 July 2024

48

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Large amplitude conformational change in proteins explored with a plastic network model: adenylate kinase

16 July 2024

49

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

16 July 2024

51

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Probing a structural model of the nuclear pore complex channel through molecular dynamics

16 July 2024

52

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

How to describe protein motion without amino acid sequence and atomic coordinates.

16 July 2024

53

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Domain movements in human fatty acid synthase by quantized elastic deformational model

16 July 2024

54

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Translocation through the nuclear pore complex: selectivity and speed by reduction-of-dimensionality

16 July 2024

55

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Translocation through the nuclear pore: Kaps pave the way.

16 July 2024

56

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

The simplest subdivision scheme for smoothing polyhedra

16 July 2024

57

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

UCSF Chimera--a visualization system for exploratory research and analysis

16 July 2024

58

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

ATP-Induced shape change of nuclear pores visualized with the atomic force microscope

16 July 2024

60

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

A cryo-electron microscopic study of ribosome-bound termination factor RF2

16 July 2024

61

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Kinetic analysis of translocation through nuclear pore complexes

16 July 2024

62

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

The yeast nuclear pore complex: composition, architecture, and transport mechanism

16 July 2024

63

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Virtual gating and nuclear transport: the hole picture

16 July 2024

64

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Efficient determination of low-frequency normal modes of large protein structures by cluster-NMA.

16 July 2024

65

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

The subspace iteration method in protein normal mode analysis.

16 July 2024

66

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Structure, evolutionary conservation, and conformational dynamics of Homo sapiens fascin-1, an F-actin crosslinking protein

16 July 2024

67

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Class-1 translation termination factors: invariant GGQ minidomain is essential for release activity and ribosome binding but not for stop codon recognition

16 July 2024

68

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Steroids dilate nuclear pores imaged with atomic force microscopy.

16 July 2024

69

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Glucocorticoids remodel nuclear envelope structure and permeability

16 July 2024

70

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

The crystal structure of human eukaryotic release factor eRF1--mechanism of stop codon recognition and peptidyl-tRNA hydrolysis

16 July 2024

72

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Molecular mechanism of the nuclear protein import cycle

16 July 2024

73

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Calcium-mediated structural changes of native nuclear pore complexes monitored by time-lapse atomic force microscopy

16 July 2024

74

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

The nuclear pore complex: bridging nuclear transport and gene regulation

16 July 2024

75

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Breathing mode of conformational fluctuations in globular proteins

16 July 2024

76

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement

16 July 2024

77

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

16 July 2024

Peering through the Pore

78

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

New electron microscopy database and deposition system

16 July 2024

79

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Exploring global distortions of biological macromolecules and assemblies from low-resolution structural information and elastic network theory.

16 July 2024

81

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Allostery wiring diagrams in the transitions that drive the GroEL reaction cycle

16 July 2024

82

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Crossing the nuclear envelope: hierarchical regulation of nucleocytoplasmic transport

16 July 2024

83

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

16 July 2024

84

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Bacterial polypeptide release factor RF2 is structurally distinct from eukaryotic eRF1

16 July 2024

85

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

ProMode: a database of normal mode analyses on protein molecules with a full-atom model.

16 July 2024

86

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

On the octagonal structure of the nuclear pore complex: insights from coarse-grained models.

16 July 2024

87

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

GroEL/GroES: structure and function of a two-stroke folding machine

16 July 2024

88

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

iGNM: a database of protein functional motions based on Gaussian Network Model.

16 July 2024

89

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Allosteric transitions of supramolecular systems explored by network models: application to chaperonin GroEL.

16 July 2024

90

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Visualization of the maturation transition in bacteriophage P22 by electron cryomicroscopy

16 July 2024

91

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

Network of dynamically important residues in the open/closed transition in polymerases is strongly conserved

16 July 2024

92

1 reference

https://api.crossref.org/works/10.1016/J.JSB.2010.09.015

16 July 2024

Identifiers

1 reference

29 May 2018

1 reference

29 May 2018