(Q54415244)

29 May 2018

title

CGDB: a database of membrane protein/lipid interactions by coarse-grained molecular dynamics simulations. (English)

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29 May 2018

0 references

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Alan P Chetwynd

1

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29 May 2018

Kathryn A Scott

series ordinal

2

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29 May 2018

Younes Mokrab

series ordinal

3

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29 May 2018

Mark S P Sansom

series ordinal

4

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29 May 2018

publication date

1 December 2008

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29 May 2018

Molecular Membrane Biology

published in

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29 May 2018

volume

25

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29 May 2018

issue

8

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29 May 2018

page(s)

662-669

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29 May 2018

Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

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1 reference

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Modulation of Na,K-ATPase and Na-ATPase activity by phospholipids and cholesterol. I. Steady-state kinetics

21 January 2018

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Characterization of the single Ca(2+)-binding site on the Ca(2+)-ATPase reconstituted with short- or long-chain phosphatidylcholines

21 January 2018

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Lipid modulation of nicotinic acetylcholine receptor function: the role of membrane lipid composition and fluidity

21 January 2018

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Effects of lipid environment on the light-induced conformational changes of rhodopsin. 1. Absence of metarhodopsin II production in dimyristoylphosphatidylcholine recombinant membranes

21 January 2018

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Effects of lipid environment on the light-induced conformational changes of rhodopsin. 2. Roles of lipid chain length, unsaturation, and phase state.

21 January 2018

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How lipids affect the activities of integral membrane proteins

21 January 2018

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Specific roles of protein-phospholipid interactions in the yeast cytochrome bc1 complex structure

21 January 2018

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Disruption of a specific molecular interaction with a bound lipid affects the thermal stability of the purple bacterial reaction centre

21 January 2018

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Probing the interface between membrane proteins and membrane lipids by X-ray crystallography

21 January 2018

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Lipids and membrane protein structures

21 January 2018

1 reference

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Rhodopsin exhibits a preference for solvation by polyunsaturated docosohexaenoic acid

21 January 2018

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A role for direct interactions in the modulation of rhodopsin by omega-3 polyunsaturated lipids.

21 January 2018

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The MARTINI force field: coarse grained model for biomolecular simulations

21 January 2018

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The MARTINI Coarse-Grained Force Field: Extension to Proteins.

21 January 2018

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Insertion of X-ray structures of proteins in membranes

21 January 2018

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An Implicit Membrane Generalized Born Theory for the Study of Structure, Stability, and Interactions of Membrane Proteins

21 January 2018

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Properties of integral membrane protein structures: derivation of an implicit membrane potential.

21 January 2018

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Evaluating tilt angles of membrane-associated helices: comparison of computational and NMR techniques.

21 January 2018

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Coarse-grained simulation: a high-throughput computational approach to membrane proteins

21 January 2018

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Coarse-grained MD simulations of membrane protein-bilayer self-assembly.

21 January 2018

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Bilayer thickness and membrane protein function: an energetic perspective.

21 January 2018

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Different effects of lipid chain length on the two sides of a membrane and the lipid annulus of MscL.

21 January 2018

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Requirement of a 5-lipoxygenase-activating protein for leukotriene synthesis

21 January 2018

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Gating the bacterial mechanosensitive channels: MscS a new paradigm?

21 January 2018

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Crystal structure of inhibitor-bound human 5-lipoxygenase-activating protein

21 January 2018

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X-ray structure of a voltage-dependent K+ channel

21 January 2018

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https://api.crossref.org/works/10.1080%2F09687680802446534

A voltage-gated proton-selective channel lacking the pore domain

21 January 2018

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Interface connections of a transmembrane voltage sensor

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F09687680802446534

Environment of the gating charges in the Kv1.2 Shaker potassium channel

21 January 2018

1 reference

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Bilayer deformation by the Kv channel voltage sensor domain revealed by self-assembly simulations.

21 January 2018

1 reference

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How does a voltage sensor interact with a lipid bilayer? Simulations of a potassium channel domain.

21 January 2018

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Dynamics of the Kv1.2 voltage-gated K+ channel in a membrane environment

21 January 2018

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Insertion and assembly of membrane proteins via simulation.

21 January 2018

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A study of the membrane-water interface region of membrane proteins.

21 January 2018

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Atomic structure of a voltage-dependent K+ channel in a lipid membrane-like environment

21 January 2018

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https://api.crossref.org/works/10.1080%2F09687680802446534

Transmembrane helices of membrane proteins may flex to satisfy hydrophobic mismatch.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F09687680802446534

Anisotropy of fluctuation dynamics of proteins with an elastic network model

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F09687680802446534

X-ray structure of a prokaryotic pentameric ligand-gated ion channel

21 January 2018

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GROMACS 3.0: a package for molecular simulation and trajectory analysis

21 January 2018

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Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F09687680802446534

Identification and isolation of a membrane protein necessary for leukotriene production

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F09687680802446534

Phospholipids and the origin of cationic gating charges in voltage sensors

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F09687680802446534

10.1080/09687680802446534

21 January 2018

Identifiers

DOI

1 reference

29 May 2018

PubMed ID

18937097

1 reference

29 May 2018