(Q54600766)

1 June 2018

title

A mesoscopic model for protein enzymatic dynamics in solution. (English)

1 reference

1 June 2018

author

Yuichi Togashi

2

1 reference

1 June 2018

author name string

Carlos Echeverria

1

1 reference

1 June 2018

Alexander S Mikhailov

3

1 reference

1 June 2018

Raymond Kapral

4

1 reference

1 June 2018

language of work or name

English

0 references

publication date

25 March 2011

1 reference

1 June 2018

Physical Chemistry Chemical Physics

published in

1 reference

1 June 2018

volume

13

1 reference

1 June 2018

issue

22

1 reference

1 June 2018

page(s)

10527-10537

1 reference

1 June 2018

Molecular dynamics: survey of methods for simulating the activity of proteins

cites work

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Atomic-level characterization of the structural dynamics of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Molecular simulation of ab initio protein folding for a millisecond folder NTL9(1-39)

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Coarse-grained normal mode analysis in structural biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Tracing entire operation cycles of molecular motor hepatitis C virus helicase in structurally resolved dynamical simulations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Large amplitude conformational change in proteins explored with a plastic network model: adenylate kinase

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Theoretical Studies of Protein Folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Coarse-grained free energy functions for studying protein conformational changes: a double-well network model

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Adenylate kinase and AMP signaling networks: metabolic monitoring, signal communication and body energy sensing

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Illuminating the mechanistic roles of enzyme conformational dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Conformational transitions in DNA polymerase I revealed by single-molecule FRET.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Computation of conformational transitions in proteins by virtual atom molecular mechanics as validated in application to adenylate kinase

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

NMR identification of transient complexes critical to adenylate kinase catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Conformational transitions of adenylate kinase: switching by cracking

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Conformational transitions in adenylate kinase. Allosteric communication reduces misligation

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Dynamic energy landscape view of coupled binding and protein conformational change: induced-fit versus population-shift mechanisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Associative mechanism for phosphoryl transfer: a molecular dynamics simulation of Escherichia coli adenylate kinase complexed with its substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Molecular dynamics of apo-adenylate kinase: a distance replica exchange method for the free energy of conformational fluctuations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Essential dynamics sampling study of adenylate kinase: comparison to citrate synthase and implication for the hinge and shear mechanisms of domain motions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Escherichia coli adenylate kinase dynamics: comparison of elastic network model modes with mode-coupling (15)N-NMR relaxation data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Zipping and unzipping of adenylate kinase: atomistic insights into the ensemble of open<-->closed transitions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

ATP-binding site of adenylate kinase: mechanistic implications of its homology with ras-encoded p21, F1-ATPase, and other nucleotide-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Roles of static and dynamic domains in stability and catalysis of adenylate kinase

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Domain closure in adenylate kinase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

An iso-random Bi Bi mechanism for adenylate kinase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Movie of the structural changes during a catalytic cycle of nucleoside monophosphate kinases

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Adenylate kinase motions during catalysis: an energetic counterweight balancing substrate binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Structure of the complex between adenylate kinase from Escherichia coli and the inhibitor Ap5A refined at 1.9 A resolution. A model for a catalytic transition state

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Hydrodynamic and Brownian Fluctuations in Sedimenting Suspensions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Life at low Reynolds number

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Equilibrium calculation of transport coefficients for a fluid-particle model

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Kinetic theory derivation of the transport coefficients of stochastic rotation dynamics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Protein conformational transitions explored by mixed elastic network models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Coarse grain models and the computer simulation of soft materials

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

Slow Conformational Dynamics and Unfolding of the Calmodulin C-Terminal Domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP00003A

21 January 2018

Identifiers

DOI

10.1039/C1CP00003A

1 reference

1 June 2018

1 reference

1 June 2018