(Q54777187)

3 June 2018

title

RNA folding during transcription: protocols and studies. (English)

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3 June 2018

author name string

Terrence N Wong

series ordinal

1

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3 June 2018

Tao Pan

series ordinal

2

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3 June 2018

language of work or name

English

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publication date

1 January 2009

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3 June 2018

published in

Methods in Enzymology

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3 June 2018

volume

468

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3 June 2018

page(s)

167-193

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3 June 2018

RNA dynamics: it is about time.

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Exploring RNA folding one molecule at a time.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Rapid purification of His(6)-tagged Bacillus subtilis core RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

RNA polymerases from Bacillus subtilis and Escherichia coli differ in recognition of regulatory signals in vitro

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Fate of an intervening sequence ribonucleic acid: excision and cyclization of the Tetrahymena ribosomal ribonucleic acid intervening sequence in vivo

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Biological catalysis by RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Overproduction, purification, and characterization of Bacillus subtilis RNA polymerase sigma A factor

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Structural investigation of the GlmS ribozyme bound to Its catalytic cofactor

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Pulling on the nascent RNA during transcription does not alter kinetics of elongation or ubiquitous pausing

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

A mechanistic framework for co-transcriptional folding of the HDV genomic ribozyme in the presence of downstream sequence

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Ribozyme structures and mechanisms

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Ribozyme structures and mechanisms

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

The chemical repertoire of natural ribozymes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

1 reference

7 January 2021

Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Crystal structures of the thi-box riboswitch bound to thiamine pyrophosphate analogs reveal adaptive RNA-small molecule recognition

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Self-splicing of the Tetrahymena pre-rRNA is decreased by misfolding during transcription

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Structure and function of the hairpin ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

The catalytic diversity of RNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Ribonuclease P: unity and diversity in a tRNA processing ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Folding kinetics of large RNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Direct observation of hierarchical folding in single riboswitch aptamers

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Catalytic Activity of an RNA Molecule Prepared by Transcription in Vitro

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Self-splicing of the Tetrahymena intron from mRNA in mammalian cells

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Evidence for preorganization of the glmS ribozyme ligand binding pocket

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Effect of transcription on folding of the Tetrahymena ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Modeling RNA folding paths with pseudoknots: application to hepatitis delta virus ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Self-splicing of a group I intron reveals partitioning of native and misfolded RNA populations in yeast

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Structural basis of glmS ribozyme activation by glucosamine-6-phosphate

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Intracellular folding of the Tetrahymena group I intron depends on exon sequence and promoter choice

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Protein component of Bacillus subtilis RNase P specifically enhances the affinity for precursor-tRNAAsp

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Recombinant bacterial RNA polymerase: preparation and applications

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Amino acid changes in conserved regions of the beta-subunit of Escherichia coli RNA polymerase alter transcription pausing and termination.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Quantitative analysis of transcriptional pausing by Escherichia coli RNA polymerase: his leader pause site as paradigm

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Ligand-induced folding of the thiM TPP riboswitch investigated by a structure-based fluorescence spectroscopic approach.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Self-cleaving catalytic RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Kinetics and thermodynamics make different contributions to RNA folding in vitro and in yeast

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

A glycine-dependent riboswitch that uses cooperative binding to control gene expression

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Co-transcriptional folding is encoded within RNA genes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

A thermodynamic framework for the magnesium-dependent folding of RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

RNA folding during transcription by Escherichia coli RNA polymerase analyzed by RNA self-cleavage

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Facilitation of Group I Splicing in Vivo: Misfolding of the Tetrahymena IVS and the Role of Ribosomal RNA Exons

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Molecular basis of gene regulation by the THI-box riboswitch

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Evolutionary perspective on the structure and function of ribonuclease P, a ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Higher order folding and domain analysis of the ribozyme from Bacillus subtilis ribonuclease P.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Multiple substrate binding sites in the ribozyme from Bacillus subtilis RNase P.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

RNA folding during transcription

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Folding of a large ribozyme during transcription and the effect of the elongation factor NusA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Role of the protein moiety of ribonuclease P, a ribonucleoprotein enzyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Secondary structures and functional requirements for thiM riboswitches from Desulfovibrio vulgaris, Erwinia carotovora and Rhodobacter spheroides

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Formation of metastable RNA structures by sequential folding during transcription: time-resolved structural analysis of potato spindle tuber viroid (-)-stranded RNA by temperature-gradient gel electrophoresis

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Amplification and isolation of E. coli nusA protein and studies of its effects on in vitro RNA chain elongation

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Graphical exploratory data analysis of RNA secondary structure dynamics predicted by the massively parallel genetic algorithm

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

RNA folding: models and perspectives

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Use of T7 RNA polymerase to direct expression of cloned genes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Generality of the branched pathway in transcription initiation by Escherichia coli RNA polymerase.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Trans-acting glmS catalytic riboswitch: locked and loaded

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Kinetic oligonucleotide hybridization for monitoring kinetic folding of large RNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Beyond kinetic traps in RNA folding

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

RNA folding during transcription by T7 RNA polymerase analyzed using the self-cleaving transcript assay

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

The Speed of RNA Transcription and Metabolite Binding Kinetics Operate an FMN Riboswitch

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

An mRNA structure that controls gene expression by binding FMN

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Control of gene expression by a natural metabolite-responsive ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Mechanistic insights on the folding of a large ribozyme during transcription

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Folding mechanisms of group I ribozymes: role of stability and contact order

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Metal ions and RNA folding: a highly charged topic with a dynamic future

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Encoding folding paths of RNA switches

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

Kinetic intermediates in RNA folding

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968009-5

7 January 2021

10.1016/S0076-6879(09)68009-5

Identifiers

DOI

1 reference

3 June 2018

PubMed ID

20946770

1 reference

3 June 2018