(Q54984405)

14 June 2018

title

Splitting probabilities as a test of reaction coordinate choice in single-molecule experiments. (English)

1 reference

14 June 2018

author

John D. Chodera

series ordinal

1

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14 June 2018

Vijay Pande

series ordinal

2

object named as

Vijay S Pande

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14 June 2018

language of work or name

English

0 references

publication date

23 August 2011

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14 June 2018

published in

Physical Review Letters

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14 June 2018

volume

107

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14 June 2018

issue

9

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14 June 2018

page(s)

098102

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14 June 2018

Improving signal/noise resolution in single-molecule experiments using molecular constructs with short handles

cites work

1 reference

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16 June 2018

1 reference

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Coordinate-dependent diffusion in protein folding

16 June 2018

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Optimal estimators and asymptotic variances for nonequilibrium path-ensemble averages

16 June 2018

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Statistically optimal analysis of samples from multiple equilibrium states

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4731355

Protein-DNA chimeras for single molecule mechanical folding studies with the optical tweezers

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4731355

Exact low-force kinetics from high-force single-molecule unfolding events

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4731355

Direct measurement of the full, sequence-dependent folding landscape of a nucleic acid

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4731355

Probing the mechanical folding kinetics of TAR RNA by hopping, force-jump, and force-ramp methods

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4731355

Transition path sampling: throwing ropes over rough mountain passes, in the dark.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4731355

Nonlinear reaction coordinate analysis in the reweighted path ensemble.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4731355

A large collapsed-state RNA can exhibit simple exponential single-molecule dynamics

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4731355

Pulling direction as a reaction coordinate for the mechanical unfolding of single molecules

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4731355

Extensions to the likelihood maximization approach for finding reaction coordinates.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4731355

One-dimensional reaction coordinate and the corresponding potential of mean force from commitment probability distribution

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4731355

Automatic method for identifying reaction coordinates in complex systems.

13 August 2018

1 reference

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Passive all-optical force clamp for high-resolution laser trapping.

13 August 2018

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On the transition coordinate for protein folding

13 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1103%2FPHYSREVLETT.107.098102

Compaction and tensile forces determine the accuracy of folding landscape parameters from single molecule pulling experiments

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1103%2FPHYSREVLETT.107.098102

Using the histogram test to quantify reaction coordinate error

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21929272

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Optimized free energies from bidirectional single-molecule force spectroscopy

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21929272

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1103/PHYSREVLETT.107.098102

1 reference

14 June 2018

0 references

1 reference

14 June 2018

PubMed publication ID

21929272

1 reference

14 June 2018