(Q55016929)

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Ancient DNA reveals the timing and persistence of organellar genetic bottlenecks over 3,000 years of sunflower domestication and improvement

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scholarly article

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Ancient DNA reveals the timing and persistence of organellar genetic bottlenecks over 3,000 years of sunflower domestication and improvement (English)

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Benjamin K Blackman

object named as

Benjamin K. Blackman

8

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Nathan Wales

1

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Marcus Thomas Pius Gilbert

7

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M. Thomas P. Gilbert

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author name string

Melis Akman

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Ray H. B. Watson

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Fátima Sánchez Barreiro

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Bruce D. Smith

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Kristen J. Gremillion

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language of work or name

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publication date

13 February 2018

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Evolutionary Applications

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12

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1

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38-53

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Basic local alignment search tool

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Median-joining networks for inferring intraspecific phylogenies

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Ancient DNA: do it right or not at all

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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The PET1-CMS mitochondrial mutation in sunflower is associated with premature programmed cell death and cytochrome c release

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Genetic analysis of sunflower domestication.

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Unreliable mtDNA data due to nuclear insertions: a cautionary tale from analysis of humans and other great apes

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Origin of extant domesticated sunflowers in eastern North America

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Patterns of nucleotide diversity in wild and cultivated sunflower

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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The origin of European cattle: evidence from modern and ancient DNA

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Assessing ancient DNA studies

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Chloroplast DNA Variation Confirms a Single Origin of Domesticated Sunflower (Helianthus annuus L.)

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Eastern North America as an independent center of plant domestication

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Quantitative trait locus analysis of the early domestication of sunflower.

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Ancient DNA, pig domestication, and the spread of the Neolithic into Europe

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Whole-genome shotgun sequencing of mitochondria from ancient hair shafts

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Sunflower (Helianthus annuus L.) as a pre-Columbian domesticate in Mexico

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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A genomic scan for selection reveals candidates for genes involved in the evolution of cultivated sunflower (Helianthus annuus).

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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The nature of selection during plant domestication

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Initial formation of an indigenous crop complex in eastern North America at 3800 B.P.

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Fast and accurate short read alignment with Burrows-Wheeler transform

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https://pubmed.ncbi.nlm.nih.gov/30622634

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A DNA barcode for land plants

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pegas: an R package for population genetics with an integrated-modular approach

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https://pubmed.ncbi.nlm.nih.gov/30622634

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Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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The role of recently derived FT paralogs in sunflower domestication

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Illumina sequencing library preparation for highly multiplexed target capture and sequencing

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https://pubmed.ncbi.nlm.nih.gov/30622634

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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The variant call format and VCFtools

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Integrative analysis of environmental sequences using MEGAN4

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Sunflower domestication alleles support single domestication center in eastern North America

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics.

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https://pubmed.ncbi.nlm.nih.gov/30622634

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Reconciling extremely strong barriers with high levels of gene exchange in annual sunflowers.

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Maternal inheritance of mitochondrial DNA by diverse mechanisms to eliminate paternal mitochondrial DNA

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Ancient DNA damage

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Sequence validation of candidates for selectively important genes in sunflower

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Gene flow between cultivated and wild sunflowers

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Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an artichoke

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Optimization of DNA recovery and amplification from non-carbonized archaeobotanical remains

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Transoceanic drift and the domestication of African bottle gourds in the Americas.

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Pulling out the 1%: whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Long-term introgression of crop genes into wild sunflower populations.

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX.

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https://pubmed.ncbi.nlm.nih.gov/30622634

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Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

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https://pubmed.ncbi.nlm.nih.gov/30622634

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Ancient genomics

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https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

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Quantitative trait locus mapping identifies candidate alleles involved in adaptive introgression and range expansion in a wild sunflower.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome scans reveal candidate domestication and improvement genes in cultivated sunflower, as well as post-domestication introgression with wild relatives

1 reference

https://pubmed.ncbi.nlm.nih.gov/30622634

12 December 2020

based on heuristic

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Core questions in domestication research

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https://pubmed.ncbi.nlm.nih.gov/30622634

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New insights on single-stranded versus double-stranded DNA library preparation for ancient DNA.

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AdapterRemoval v2: rapid adapter trimming, identification, and read merging

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https://pubmed.ncbi.nlm.nih.gov/30622634

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Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley

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Genome Sequence of a 5,310-Year-Old Maize Cob Provides Insights into the Early Stages of Maize Domestication

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The efficacy of high-throughput sequencing and target enrichment on charred archaeobotanical remains

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The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

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popart : full‐feature software for haplotype network construction

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20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1111/2041-210X.12410

Identifiers

10.1111/EVA.12594

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