(Q56555946)

Continued use of retracted papers: Temporal trends in citations and (lack of) awareness of retractions shown in citation contexts in biomedicine

PubMed

https://github.com/jmillanacosta/retractable/blob/e28dcac33244e89948fe17fb65f09b59e2ed804d/data/PMIDS_DOIS.csv

title

Molecular modeling and molecular dynamics simulation studies of Delta-Notch complex (English)

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author name string

Riddhi Majumder

series ordinal

1

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Sujata Roy

series ordinal

2

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Ashoke Ranjan Thakur

series ordinal

3

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language of work or name

English

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publication date

October 2011

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published in

Journal of Biomolecular Structure and Dynamics

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volume

29

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issue

2

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page(s)

297-310

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cites work

Notch signaling: cell fate control and signal integration in development

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

A novel proteolytic cleavage involved in Notch signaling: the role of the disintegrin-metalloprotease TACE

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

p300 acts as a transcriptional coactivator for mammalian Notch-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Notch signaling: control of cell communication and cell fate

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Sequence analysis, structure prediction, and functional validation of phaC1/phaC2 genes of Pseudomonas sp. LDC-25 and its importance in polyhydroxyalkanoate accumulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Molecular modeling of human pentameric alpha(7) neuronal nicotinic acetylcholine receptor and its interaction with its agonist and competitive antagonist

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Homology modeling of GLUT4, an insulin regulated facilitated glucose transporter and docking studies with ATP and its inhibitors

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Determination of phosphorylation sites for NADP-specific isocitrate dehydrogenase from mycobacterium tuberculosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Function prediction of Rv0079, a hypothetical Mycobacterium tuberculosis DosR regulon protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Simulation studies on the stabilities of aggregates formed by fibril-forming segments of alpha-Synuclein

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Studies on the structural stability of rabbit prion probed by molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Investigation of the effect of glycosylation on human prion protein by molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Molecular dynamics simulations to investigate the structural stability and aggregation behavior of the GGVVIA oligomers derived from amyloid beta peptide

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Molecular dynamics simulations to investigate the aggregation behaviors of the Abeta(17-42) oligomers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Molecular dynamics simulations to gain insights into the stability and morphologies of K3 oligomers from beta2-microglobulin

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Disruption mechanism in the helix of SPF peptide by interchanging E5 and K10 residues: inference from molecular dynamics study.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

An insight to the dynamics of conserved water molecular triad in IMPDH II (human): recognition of cofactor and substrate to catalytic Arg 322.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Effects of disease causing mutations on the essential motions in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Reconstructing potentials of mean force from short steered molecular dynamics simulations of Vpu from HIV-1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Structural and dynamic properties of a new amyloidogenic chicken cystatin mutant I108T.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

A comparative study of two different force fields on structural and thermodynamics character of H1 peptide via molecular dynamics simulations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Structural model of the pre-pore ring-like structure of Panton-Valentine leukocidin: providing dimensionality to biophysical and mutational data

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Conformational and oligomeric effects on the cysteine pK(a) of tryparedoxin peroxidase

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Insight derived from molecular dynamics simulation into substrate-induced changes in protein motions of proteinase K.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Molecular dynamics studies on troponin (TnI-TnT-TnC) complexes: insight into the regulation of muscle contraction

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Effects of pH and temperature on the structural and thermodynamic character of alpha-syn12 peptide in aqueous solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Influence of the acetylcholinesterase active site protonation on omega loop and active site dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Molecular modeling of Mycobacterium tuberculosis DNA gyrase and its molecular docking study with gatifloxacin inhibitors

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Homology modeling of Cry10Aa toxin from B. thuringiensis israelensis and B. thuringiensis subsp. LDC-9.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Homology modeling and docking studies of human Bcl-2L10 protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Exploring the potential of complex formation between a mutant DNA and the wild type protein counterpart: a MM and MD simulation approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Two models of Smad4 and Hoxa9 complex are proposed: structural and interactional perspective.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Structure-function analysis of delta trafficking, receptor binding and signaling in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

GRAMM-X public web server for protein-protein docking

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

ProFace: a server for the analysis of the physicochemical features of protein-protein interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Inference of macromolecular assemblies from crystalline state

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Liquid-structure forces and electrostatic modulation of biomolecular interactions in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

PROCHECK: a program to check the stereochemical quality of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

A conserved face of the Jagged/Serrate DSL domain is involved in Notch trans-activation and cis-inhibition

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Principles of protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386

Endocytic regulation of notch signalling during development

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2011.10507386