(Q56780435)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24595807%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

title

A conformational analysis of mouse Nalp3 domain structures by molecular dynamics simulations, and binding site analysis (English)

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9 March 2020

1

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9 March 2020

Jitendra Maharana

2

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9 March 2020

Mahesh Chandra Patra

5

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9 March 2020

Manas R. Dikhit

6

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9 March 2020

Bijay Kumar Behera

9

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9 March 2020

author name string

Gopal K Bhoi

3

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9 March 2020

Santosh K Lenka

4

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9 March 2020

Praveen K Dubey

7

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9 March 2020

Sukanta K Pradhan

8

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9 March 2020

publication date

1 May 2014

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9 March 2020

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9 March 2020

volume

10

1 reference

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9 March 2020

issue

5

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9 March 2020

page(s)

1104-1116

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describes a project that uses

9 March 2020

molecular dynamics simulation

1 reference

based on heuristic

inferred from title

cites work

Approaching the asymptote? Evolution and revolution in immunology

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Pathogen recognition and innate immunity

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The NLR gene family: a standard nomenclature

21 January 2018

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CATERPILLERs, pyrin and hereditary immunological disorders

21 January 2018

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Cutting edge: CATERPILLER: a large family of mammalian genes containing CARD, pyrin, nucleotide-binding, and leucine-rich repeat domains

21 January 2018

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Identification of a locus on chromosome 1q44 for familial cold urticaria

21 January 2018

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The Nod-like receptor (NLR) family: a tale of similarities and differences

21 January 2018

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NLRs join TLRs as innate sensors of pathogens

21 January 2018

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Critical role for NALP3/CIAS1/Cryopyrin in innate and adaptive immunity through its regulation of caspase-1

21 January 2018

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The NLRP3 inflammasome promotes renal inflammation and contributes to CKD.

21 January 2018

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Cryopyrin activates the inflammasome in response to toxins and ATP

21 January 2018

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Bacterial RNA and small antiviral compounds activate caspase-1 through cryopyrin/Nalp3

21 January 2018

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Gout-associated uric acid crystals activate the NALP3 inflammasome

21 January 2018

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Identification of bacterial muramyl dipeptide as activator of the NALP3/cryopyrin inflammasome.

21 January 2018

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MDP-induced interleukin-1beta processing requires Nod2 and CIAS1/NALP3.

21 January 2018

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Clustal W and Clustal X version 2.0

21 January 2018

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ESPript/ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteins

21 January 2018

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GeneSilico protein structure prediction meta-server.

21 January 2018

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3D-Jury: a simple approach to improve protein structure predictions

21 January 2018

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I-TASSER server for protein 3D structure prediction

21 January 2018

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LOMETS: a local meta-threading-server for protein structure prediction

21 January 2018

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Comparative protein modelling by satisfaction of spatial restraints

21 January 2018

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MolProbity: all-atom structure validation for macromolecular crystallography

21 January 2018

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WHAT IF: a molecular modeling and drug design program

21 January 2018

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SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling

21 January 2018

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3Drefine: consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimization

21 January 2018

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GROMACS: fast, flexible, and free

21 January 2018

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GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

21 January 2018

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VMD: visual molecular dynamics

21 January 2018

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ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins

21 January 2018

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Can correct protein models be identified?

21 January 2018

1 reference

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VADAR: a web server for quantitative evaluation of protein structure quality

21 January 2018

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GeNMR: a web server for rapid NMR-based protein structure determination

21 January 2018

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21 January 2018

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AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility

21 January 2018

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Identification of MDP (muramyl dipeptide)-binding key domains in NOD2 (nucleotide-binding and oligomerization domain-2) receptor of Labeo rohita.

21 January 2018

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Elucidation of novel structural scaffold in rohu TLR2 and its binding site analysis with peptidoglycan, lipoteichoic acid and zymosan ligands, and downstream MyD88 adaptor protein

21 January 2018

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Activation of nucleotide-binding oligomerization domain 1 (NOD1) receptor signaling in Labeo rohita by iE-DAP and identification of ligand-binding key motifs in NOD1 by molecular modeling and docking

21 January 2018

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Pathogen sensing by nucleotide-binding oligomerization domain-containing protein 2 (NOD2) is mediated by direct binding to muramyl dipeptide and ATP.

21 January 2018

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Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models

21 January 2018

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Exploring PHD fingers and H3K4me0 interactions with molecular dynamics simulations and binding free energy calculations: AIRE-PHD1, a comparative study

21 January 2018

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Computational alanine scanning of the 1:1 human growth hormone-receptor complex

21 January 2018

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The P-loop--a common motif in ATP- and GTP-binding proteins

21 January 2018

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Cryopyrin/NALP3 binds ATP/dATP, is an ATPase, and requires ATP binding to mediate inflammatory signaling

21 January 2018

1 reference

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Biochemical and structural aspects of the ATP-binding domain in inflammasome-forming human NLRP proteins

21 January 2018

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The PSIPRED protein structure prediction server

21 January 2018

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A molecular model of the full-length human NOD-like receptor family CARD domain containing 5 (NLRC5) protein

21 January 2018

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Essential dynamics of proteins

21 January 2018

1 reference

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Regulatory regions and critical residues of NOD2 involved in muramyl dipeptide recognition

21 January 2018

1 reference

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A NOD2-NALP1 complex mediates caspase-1-dependent IL-1beta secretion in response to Bacillus anthracis infection and muramyl dipeptide

21 January 2018

1 reference

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21 January 2018

Identifiers

DOI

10.1039/C3MB70600A

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24595807%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

1 reference