(Q56901988)

English

RNA sequence and secondary structural determinants in a minimal viral promoter that directs replicase recognition and initiation of genomic plus-strand RNA synthesis

article published in 1999

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scholarly article

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RNA sequence and secondary structural determinants in a minimal viral promoter that directs replicase recognition and initiation of genomic plus-strand RNA synthesis (English)

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author name string

K Sivakumaran

1

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C H Kim

2

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R Tayon

3

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C C Kao

4

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language of work or name

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publication date

3 December 1999

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Journal of Molecular Biology

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294

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3

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667-82

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The 5′-terminal sequences of the genomic RNAs of several alphaviruses

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Purification, characterization, and comparison of poliovirus RNA polymerase from native and recombinant sources

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Moieties in an RNA promoter specifically recognized by a viral RNA-dependent RNA polymerase

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Improved predictions of secondary structures for RNA

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Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: II. Specificity determinants of RNA-protein recognition

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Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

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Infectious in vitro transcripts from cowpea chlorotic mottle virus cDNA clones and exchange of individual RNA components with brome mosaic virus

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Minimal templates directing accurate initiation of subgenomic RNA synthesis in vitro by the brome mosaic virus RNA-dependent RNA polymerase

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A brome mosaic virus intergenic RNA3 replication signal functions with viral replication protein 1a to dramatically stabilize RNA in vivo.

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Requirement of a 3'-terminal stem-loop in in vitro transcription by an RNA-dependent RNA polymerase

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Involvement of a stem-loop structure in the location of junction sites in viral RNA recombination

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Primary and secondary structural elements required for synthesis of barley yellow dwarf virus subgenomic RNA1.

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Characterization of bacteriophage T4 regA protein-nucleic acid interactions

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Mutational analysis of the core and modulator sequences of the BMV RNA3 subgenomic promoter

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Initiation of (-)-strand RNA synthesis catalyzed by the BMV RNA-dependent RNA polymerase: synthesis of oligonucleotides

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Gene silencing in Neurospora crassa requires a protein homologous to RNA-dependent RNA polymerase.

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Highly active template-specific RNA-dependent RNA polymerase from barley leaves infected with brome mosaic virus

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Characterization of RNA products associated with or aborted by a viral RNA-dependent RNA polymerase

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12 December 2020

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Cis-element, oriR, involved in the initiation of (-) strand poliovirus RNA: a quasi-globular multi-domain RNA structure maintained by tertiary ('kissing') interactions

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Mechanistic analysis of RNA synthesis by RNA-dependent RNA polymerase from two promoters reveals similarities to DNA-dependent RNA polymerase.

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The nucleotide sequence and genome organization of the RNA2 and RNA3 segments in broad bean mottle virus

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Initiation of genomic plus-strand RNA synthesis from DNA and RNA templates by a viral RNA-dependent RNA polymerase.

1 reference

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Coronavirus subgenomic minus-strand RNAs and the potential for mRNA replicons

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Transcript elongation and termination are competitive kinetic processes

1 reference

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Absorbance melting curves of RNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/10610788

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Single-stranded RNA recognition by the bacteriophage T4 translational repressor, regA.

1 reference

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Spatial perturbations within an RNA promoter specifically recognized by a viral RNA-dependent RNA polymerase (RdRp) reveal that RdRp can adjust its promoter binding sites.

1 reference

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Initially transcribed sequences strongly affect the extent of abortive initiation by RNA polymerase II

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The 3′-non-coding regions of alpharivus RNAs contain repeating sequences

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Coronavirus transcription: subgenomic mouse hepatitis virus replicative intermediates function in RNA synthesis.

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Analysis of RNA-dependent RNA polymerase structure and function as guided by known polymerase structures and computer predictions of secondary structure

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Structure of the polyadenylation regulatory element of the human U1A pre-mRNA 3'-untranslated region and interaction with the U1A protein

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Nucleotide sequence of tobacco mosaic virus RNA

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Characterization and engineering of sequences controlling in vivo synthesis of brome mosaic virus subgenomic RNA

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https://pubmed.ncbi.nlm.nih.gov/10610788

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RNA structure prediction

1 reference

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12 December 2020

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Sequences 5' of the conserved tRNA-like promoter modulate the initiation of minus-strand synthesis by the brome mosaic virus RNA-dependent RNA polymerase

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12 December 2020

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Cosuppression comes to the animals

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Sequence of cowpea chlorotic mottle virus RNAs 2 and 3 and evidence of a recombination event during bromovirus evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/10610788

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The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase.

1 reference

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12 December 2020

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RNA structure and NMR spectroscopy

1 reference

https://pubmed.ncbi.nlm.nih.gov/10610788

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Protein-RNA recognition

1 reference

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A minimal RNA promoter for minus-strand RNA synthesis by the brome mosaic virus polymerase complex

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Long-distance RNA-RNA interactions and conserved sequence elements affect potato virus X plus-strand RNA accumulation

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Molecular studies of genetic RNA-RNA recombination in brome mosaic virus

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Sequence comparison of five polymerases (L proteins) of unsegmented negative-strand RNA viruses: theoretical assignment of functional domains

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Sequence- and structure-specific determinants in the interaction between the RNA encapsidation signal and reverse transcriptase of avian hepatitis B viruses

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Regulation of (+):(-)-strand asymmetry in replication of brome mosaic virus RNA.

1 reference

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Sequence studies of several alphavirus genomic RNAs in the region containing the start of the subgenomic RNA

1 reference

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Synthesis of brome mosaic virus subgenomic RNA in vitro by internal initiation on (-)-sense genomic RNA.

1 reference

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Genome sequences of a mouse-avirulent and a mouse-virulent strain of Ross River virus

1 reference

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Near identity of 3- RNA secondary structure in bromoviruses and cucumber mosaic virus

1 reference

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RNA synthesis by the brome mosaic virus RNA-dependent RNA polymerase: transition from initiation to elongation

1 reference

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Expression, purification, and partial characterization of HCV RNA polymerase

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Mapping of the red clover necrotic mosaic virus subgenomic RNA.

1 reference

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12 December 2020

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Antisense globin RNA in mouse erythroid tissues: structure, origin, and possible function

1 reference

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Identification of poliovirus polypeptide P63 as a soluble RNA-dependent RNA polymerase

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Complete sequence of the genomic RNA of O'nyong-nyong virus and its use in the construction of alphavirus phylogenetic trees

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Structure of the Ockelbo virus genome and its relationship to other sindbis viruses

1 reference

https://pubmed.ncbi.nlm.nih.gov/10610788

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The requirement for a 5' stem-loop structure in brome mosaic virus replication supports a new model for viral positive-strand RNA initiation

1 reference

https://pubmed.ncbi.nlm.nih.gov/10610788

12 December 2020

based on heuristic

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Purification and characterization of brome mosaic virus RNA-dependent RNA polymerase

1 reference

https://pubmed.ncbi.nlm.nih.gov/10610788

12 December 2020

based on heuristic

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Sequence-specific recognition of a subgenomic RNA promoter by a viral RNA polymerase

1 reference

https://pubmed.ncbi.nlm.nih.gov/10610788

12 December 2020

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Aura virus is a New World representative of Sindbis-like viruses

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Mapping sequences active in homologous RNA recombination in brome mosaic virus: prediction of recombination hot spots

1 reference

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12 December 2020

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Comparison of the replication of positive-stranded RNA viruses of plants and animals

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Synthesis and purification of large amounts of RNA oligonucleotides.

1 reference

https://pubmed.ncbi.nlm.nih.gov/10610788

12 December 2020

based on heuristic

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Sequence homology at the 3'-termini of the four RNAs of alfalfa mosaic virus

1 reference

https://pubmed.ncbi.nlm.nih.gov/10610788

12 December 2020

based on heuristic

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Mutational analysis of the sequence and structural requirements in brome mosaic virus RNA for minus strand promoter activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/10610788

12 December 2020

based on heuristic

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Protein-facilitated RNA folding

1 reference

https://pubmed.ncbi.nlm.nih.gov/10610788

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1 reference

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RNA-mediated trans-activation of transcription from a viral RNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/10610788

12 December 2020

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Bromovirus RNA replication and transcription

1 reference

https://pubmed.ncbi.nlm.nih.gov/10610788

12 December 2020

based on heuristic

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Use of DNA, RNA, and chimeric templates by a viral RNA-dependent RNA polymerase: evolutionary implications for the transition from the RNA to the DNA world.

1 reference

https://pubmed.ncbi.nlm.nih.gov/10610788

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Subgenomic RNA promoters dictate the mode of recognition by bromoviral RNA-dependent RNA polymerases

1 reference

https://pubmed.ncbi.nlm.nih.gov/10610788

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regions of conservation and divergence in the 3' untranslated sequences of genomic RNA from Ross River virus isolates

1 reference

https://pubmed.ncbi.nlm.nih.gov/10610788

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/10610788

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1006/JMBI.1999.3297

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