(Q56981739)

2

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Francesco Maria Calabrese

3

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Domenico Simone

4

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Alessio Boattini

5

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Giovanni Romeo

6

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Donata Luiselli

7

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Marcella Attimonelli

8

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Giuseppe Gasparre

Dindel: accurate indel calls from short-read data

9

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language of work or name

English

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publication date

May 2012

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published in

Human Genetics

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volume

131

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issue

5

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page(s)

757-71

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cites work

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Global distribution of genomic diversity underscores rich complex history of continental human populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Nuclear–Mitochondrial Sequences as Witnesses of Past Interbreeding and Population Diversity in the Jumping Bristletail Mesomachilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

The genetic structure of human populations studied through short insertion-deletion polymorphisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Rates of DNA Duplication and Mitochondrial DNA Insertion in the Human Genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Targeted retrieval and analysis of five Neandertal mtDNA genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Colloquium paper: genome-wide patterns of population structure and admixture among Hispanic/Latino populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Meta-Analysis of gross insertions causing human genetic disease: Novel mutational mechanisms and the role of replication slippage

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

The role of geography in human adaptation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Population bottlenecks as a potential major shaping force of human genome architecture

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Transfer of a mitochondrial DNA fragment to MCOLN1 causes an inherited case of mucolipidosis IV.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

A Draft Sequence of the Neandertal Genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Going the distance: human population genetics in a clinal world.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Magnitude of stratification in human populations and impacts on genome wide association studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Mitochondrial insertions into primate nuclear genomes suggest the use of numts as a tool for phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Numt-mediated double-strand break repair mitigates deletions during primate genome evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

A comparative analysis of numt evolution in human and chimpanzee.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Distinct gene number-genome size relationships for eukaryotes and non-eukaryotes: gene content estimation for dinoflagellate genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Population analysis of large copy number variants and hotspots of human genetic disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Genotype, haplotype and copy-number variation in worldwide human populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

A comparative approach shows differences in patterns of numt insertion during hominoid evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Developing a set of ancestry-sensitive DNA markers reflecting continental origins of humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

The RHNumtS compilation: features and bioinformatics approaches to locate and quantify Human NumtS

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Worldwide human relationships inferred from genome-wide patterns of variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Genetic variation and recent positive selection in worldwide human populations: evidence from nearly 1 million SNPs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Mitochondrial DNA-like sequences in the nucleus (NUMTs): insights into our African origins and the mechanism of foreign DNA integration

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Genes mirror geography within Europe

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Genome digging: insight into the mitochondrial genome of Homo

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Mitochondrial DNA and human evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Genetic history of an archaic hominin group from Denisova Cave in Siberia

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Mitochondrial DNA repairs double-strand breaks in yeast chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Continued colonization of the human genome by mitochondrial DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Genetic structure of human populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Forty million years of independent evolution: a mitochondrial gene and its corresponding nuclear pseudogene in primates

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

dbSNP: the NCBI database of genetic variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

The reference human nuclear mitochondrial sequences compilation validated and implemented on the UCSC genome browser

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Patterns of Human Genetic Diversity: Implications for Human Evolutionary History and Disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

The genetic structure and history of Africans and African Americans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Structure and chromosomal distribution of human mitochondrial pseudogenes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Fugu genome does not contain mitochondrial pseudogenes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00439-011-1125-3

Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies

21 January 2018

1 reference

12 December 2020

Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa

1 reference

12 December 2020

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

12 December 2020

BLAT—The BLAST-Like Alignment Tool

1 reference

12 December 2020

Novel mitochondrial DNA insertion polymorphism and its usefulness for human population studies.

1 reference

12 December 2020

The human genome browser at UCSC

1 reference

12 December 2020

Nuclear integrations of mitochondrial DNA in primates: inference of associated mutational events

1 reference

12 December 2020

Human genetic disease caused by de novo mitochondrial-nuclear DNA transfer.

1 reference

12 December 2020

The Sequence Alignment/Map format and SAMtools

1 reference

12 December 2020

Germ line insertion of mtDNA at the breakpoint junction of a reciprocal constitutional translocation

1 reference

12 December 2020

HmtDB, a genomic resource for mitochondrion-based human variability studies

1 reference

12 December 2020

Integrative genomics viewer

1 reference

12 December 2020

The UCSC Table Browser data retrieval tool

1 reference

12 December 2020

Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data

1 reference

12 December 2020

Human origins. The molecular perspective

1 reference

12 December 2020

Galaxy: a web-based genome analysis tool for experimentalists

1 reference

12 December 2020

Estimation of the coancestry coefficient: basis for a short-term genetic distance

1 reference

12 December 2020

A map of human genome variation from population-scale sequencing

1 reference

12 December 2020

Covariances of relatives stemming from a population undergoing mixed self and random mating

1 reference

12 December 2020

Pvclust: an R package for assessing the uncertainty in hierarchical clustering.

1 reference

12 December 2020