(Q56990653)

English

Hox clusters of the bichir (Actinopterygii, Polypterus senegalus) highlight unique patterns of sequence evolution in gnathostome phylogeny

scholarly article by Jeremy D. Raincrow et al published 17 June 2011 in Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution

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scholarly article

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Hox clusters of the bichir (Actinopterygii, Polypterus senegalus) highlight unique patterns of sequence evolution in gnathostome phylogeny (English)

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molecular medicine

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based on heuristic

inferred from title

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Polypterus senegalus

object named as

Polypterus senegalus

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based on heuristic

inferred from title

Peter F. Stadler

object named as

Peter F. Stadler

6

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author name string

Jeremy D. Raincrow

1

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Ken Dewar

2

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Claudia Stocsits

3

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Sonja J. Prohaska

4

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Chris T. Amemiya

5

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Chi-Hua Chiu

7

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publication date

17 June 2011

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Journal of Experimental Zoology. Part B: Molecular and Developmental Evolution

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316B

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6

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451-464

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome

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Zebrafish hox clusters and vertebrate genome evolution

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Developmental roles of pufferfish Hox clusters and genome evolution in ray-fin fish

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Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

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Phylogenetic shadowing and computational identification of human microRNA genes

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Regulatory noncoding RNAs at Hox loci

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Gene loss and evolutionary rates following whole-genome duplication in teleost fishes

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Hox cluster duplication in the basal teleost Hiodon alosoides (Osteoglossomorpha)

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HOXA11 Silencing and Endogenous HOXA11 Antisense Ribonucleic Acid in the Uterine Endometrium

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Molecular evolution of the HoxA cluster in the three major gnathostome lineages

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Bichir HoxA cluster sequence reveals surprising trends in ray-finned fish genomic evolution.

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https://api.crossref.org/works/10.1002%2FJEZ.B.21420

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Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes

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The "fish-specific" Hox cluster duplication is coincident with the origin of teleosts.

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https://api.crossref.org/works/10.1002%2FJEZ.B.21420

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Atypical relaxation of structural constraints in Hox gene clusters of the green anole lizard

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Changes in Hox genes' structure and function during the evolution of the squamate body plan.

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Functional interaction between a RARE and an AP-2 binding site in the regulation of the human HOX A4 gene promoter

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Genome duplication, extinction and vertebrate evolution

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The rise and fall of Hox gene clusters

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The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator

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Exclusion of repetitive DNA elements from gnathostome Hox clusters.

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Homeo boxes in the study of development

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Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

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Comparative genomic analysis of vertebrate Hox3 and Hox4 genes

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Detecting natural selection on cis-regulatory DNA.

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Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni

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Hox clusters as models for vertebrate genome evolution

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https://api.crossref.org/works/10.1002%2FJEZ.B.21420

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Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the "ancient fish".

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Identification of functional domains and evolution of Tc1-like transposable elements

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Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

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RNA maps reveal new RNA classes and a possible function for pervasive transcription

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The medaka draft genome and insights into vertebrate genome evolution

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Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes

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https://api.crossref.org/works/10.1002%2FJEZ.B.21420

21 January 2018

Hox cluster genomics in the horn shark, Heterodontus francisci

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https://api.crossref.org/works/10.1002%2FJEZ.B.21420

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Hox gene clusters in the Indonesian coelacanth, Latimeria menadoensis

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https://api.crossref.org/works/10.1002%2FJEZ.B.21420

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MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

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Noncanonical role of Hox14 revealed by its expression patterns in lamprey and shark.

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21420

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Organization and structure of hox gene loci in medaka genome and comparison with those of pufferfish and zebrafish genomes.

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Multiple cis-acting regulatory regions are required for restricted spatio-temporal Hoxa5 gene expression.

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The NK homeobox gene cluster predates the origin of Hox genes.

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How does noncoding transcription regulate Hox genes?

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A gene complex controlling segmentation in Drosophila

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Transcriptional control of Hox genes in the vertebrate nervous system

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https://api.crossref.org/works/10.1002%2FJEZ.B.21420

21 January 2018

Extensive polycistronism and antisense transcription in the mammalian Hox clusters

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21 January 2018

Comparative analyses of vertebrate posterior HoxD clusters reveal atypical cluster architecture in the caecilian Typhlonectes natans

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Homeobox genes and axial patterning

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Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions

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Breakup of a homeobox cluster after genome duplication in teleosts

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21 January 2018

Differential evolution of the 13 Atlantic salmon Hox clusters

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21 January 2018

Evolution of Hox gene clusters in gnathostomes: insights from a survey of a shark (Scyliorhinus canicula) transcriptome.

1 reference

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A model for initiation of mosaic HOX gene expression patterns by non-coding RNAs in early embryos

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https://api.crossref.org/works/10.1002%2FJEZ.B.21420

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Transcriptional complexity of the HOXA9 locus

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21 January 2018

The duplication of the Hox gene clusters in teleost fishes*1

1 reference

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21 January 2018

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Elephant shark (Callorhinchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes

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Sequencing and genomic annotation of the chicken (Gallus gallus) Hox clusters, and mapping of evolutionarily conserved regions

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Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

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Duplicated RNA genes in teleost fish genomes.

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https://api.crossref.org/works/10.1002%2FJEZ.B.21420

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1 reference

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21 January 2018

Evolution of chordate hox gene clusters.

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21420

21 January 2018

Evolutionary conservation of regulatory elements in vertebrate Hox gene clusters

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21420

21 January 2018

Coordinated expression of ncRNAs and HOX mRNAs in the human HOXA locus

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Characterization of multiple lineages of Tc1-like elements within the genome of the amphibian Xenopus tropicalis

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Evolution of microRNAs located within Hox gene clusters

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21 January 2018

Genome duplication, a trait shared by 22000 species of ray-finned fish

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21 January 2018

Revisiting recent challenges to the ancient fish-specific genome duplication hypothesis

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Evolution of cis elements in the differential expression of two Hoxa2 coparalogous genes in pufferfish (Takifugu rubripes).

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Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates

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Molecular synapomorphies resolve evolutionary relationships of extant jawed vertebrates

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Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome

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Molecular evolution of duplicated ray finned fish HoxA clusters: increased synonymous substitution rate and asymmetrical co-divergence of coding and non-coding sequences.

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https://api.crossref.org/works/10.1002%2FJEZ.B.21420

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Fast and reliable prediction of noncoding RNAs

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https://api.crossref.org/works/10.1002%2FJEZ.B.21420

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MiR-10 represses HoxB1a and HoxB3a in zebrafish

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The zebrafish gene map defines ancestral vertebrate chromosomes

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https://api.crossref.org/works/10.1002%2FJEZ.B.21420

21 January 2018

MicroRNA-directed cleavage of HOXB8 mRNA

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21420

21 January 2018

MicroRNAs in the Hox network: an apparent link to posterior prevalence

1 reference

https://api.crossref.org/works/10.1002%2FJEZ.B.21420

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A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster

1 reference

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Identifiers

10.1002/JEZ.B.21420

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