(Q57087788)

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Detecting Site-Specific Physicochemical Selective Pressures: Applications to the Class I HLA of the Human Major Histocompatibility Complex and the SRK of the Plant Sporophytic Self-Incompatibility System

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scholarly article

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Detecting Site-Specific Physicochemical Selective Pressures: Applications to the Class I HLA of the Human Major Histocompatibility Complex and the SRK of the Plant Sporophytic Self-Incompatibility System (English)

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object named as

Rasmus Nielsen

6

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author name string

Raazesh Sainudiin

1

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Wendy Shuk Wan Wong

2

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Krithika Yogeeswaran

3

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June B. Nasrallah

4

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Ziheng Yang

5

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publication date

March 2005

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Journal of Molecular Evolution

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60

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3

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315-326

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https://scigraph.springernature.com/pub.10.1007/s00239-004-0153-1

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Ratios of radical to conservative amino acid replacement are affected by mutational and compositional factors and may not be indicative of positive Darwinian selection

1 reference

https://api.crossref.org/works/10.1007%2FS00239-004-0153-1

21 January 2018

Codon and rate variation models in molecular phylogeny.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-004-0153-1

21 January 2018

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

1 reference

https://api.crossref.org/works/10.1007%2FS00239-004-0153-1

21 January 2018

Structural studies of class I major histocompatibility complex proteins: insights into antigen presentation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recombination within the human MHC.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon-substitution models for heterogeneous selection pressure at amino acid sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence variability analysis of human class I and class II MHC molecules: functional and structural correlates of amino acid polymorphisms

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Coevolution of the S-locus genes SRK, SLG and SP11/SCR in Brassica oleracea and B. rapa.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bound water structure and polymorphic amino acids act together to allow the binding of different peptides to MHC class I HLA-B53

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HLA-B27 subtypes differentially associated with disease exhibit subtle structural alterations

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparison of the P2 specificity pocket in three human histocompatibility antigens: HLA-A*6801, HLA-A*0201, and HLA-B*2705.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Two types of amino acid substitutions in protein evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Strong balancing selection at HLA loci: evidence from segregation in South Amerindian families

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positive Darwinian selection drives the evolution of several female reproductive proteins in mammals

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The male determinant of self-incompatibility in Brassica

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enhanced immunological surveillance in mice heterozygous at the H-2 gene complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Selective Constraints on Amino-acid Substitutions during the Evolution of Proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Physical linkage of the SLG and SRK genes at the self-incompatibility locus of Brassica oleracea

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Relations between chemical structure and biological activity in peptides

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polymorphism in the alpha 1 helix of the HLA-B heavy chain can have an overriding influence on peptide-binding specificity

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Self-incompatibility in the Brassicaceae: receptor-ligand signaling and cell-to-cell communication.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic analysis of protein stability and function

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The self-incompatibility (S) haplotypes of Brassica contain highly divergent and rearranged sequences of ancient origin

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recognition and rejection of self in plant reproduction

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Models of amino acid substitution and applications to mitochondrial protein evolution.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for balancing selection at HLA

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HLA polymorphism in the Havasupai: evidence for balancing selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A generalized least-squares estimate for the origin of sporophytic self-incompatibility

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Heterozygosity at individual amino acid sites: extremely high levels for HLA-A and -B genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA sequences of self-incompatibility genes from Brassica campestris and B. oleracea: polymorphism predating speciation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Naturally Selected Dimorphism within the HLA-B44 Supertype Alters Class I Structure, Peptide Repertoire, and T Cell Recognition

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Haplotype Structure of the Stigmatic Self-Incompatibility Gene in Natural Populations of Arabidopsis lyrata

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The three-dimensional structure of peptide-MHC complexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Non-randomness of amino-acid changes in the evolution of homologous proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary trees from DNA sequences: A maximum likelihood approach

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SRK, the stigma-specific S locus receptor kinase of Brassica, is targeted to the plasma membrane in transgenic tobacco.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determining the physical limits of the Brassica S locus by recombinational analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Amino acid difference formula to help explain protein evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antigenicity of HLA-A2 and HLA-B7. Loss and gain of serologic determinants induced by site-specific mutagenesis at residues 62 to 80

1 reference

https://pubmed.ncbi.nlm.nih.gov/15871042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1007/S00239-004-0153-1

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