(Q57186127)

English

Molecular dynamic simulations of the metallo-beta-lactamase from Bacteroides fragilis in the presence and absence of a tight-binding inhibitor

scientific article published on 28 November 2008

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19039608%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

Molecular dynamic simulations of the metallo-beta-lactamase from Bacteroides fragilis in the presence and absence of a tight-binding inhibitor (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19039608%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

Bacteroides fragilis

object named as

Bacteroides fragilis

1 reference

based on heuristic

inferred from title

Freddie R Salsbury

1

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19039608%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

Stephen F Kingsmore

3

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19039608%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

author name string

Michael W Crowder

2

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19039608%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

James J A Huntley

4

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19039608%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

publication date

28 November 2008

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19039608%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

Journal of Molecular Modeling

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19039608%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

15

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19039608%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

2

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19039608%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

133-145

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19039608%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

https://scigraph.springernature.com/pub.10.1007/s00894-008-0410-0

0 references

Characterization of beta-lactamases

1 reference

https://api.crossref.org/works/10.1007%2FS00894-008-0410-0

21 January 2018

Plasmid-mediated dissemination of the metallo-beta-lactamase gene blaIMP among clinically isolated strains of Serratia marcescens

1 reference

https://api.crossref.org/works/10.1007%2FS00894-008-0410-0

21 January 2018

VIM- and IMP-type metallo-beta-lactamase-producing Pseudomonas spp. and Acinetobacter spp. in Korean hospitals

1 reference

https://api.crossref.org/works/10.1007%2FS00894-008-0410-0

21 January 2018

Sequence analysis of the L1 metallo-beta-lactamase from Xanthomonas maltophilia.

1 reference

https://api.crossref.org/works/10.1007%2FS00894-008-0410-0

21 January 2018

Overexpression, purification, and characterization of the cloned metallo-beta-lactamase L1 from Stenotrophomonas maltophilia

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of In3Mor, a new integron carrying VIM-1 metallo-beta-lactamase and sat1 gene, from Morganella morganii

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Web-based cheminformatics and molecular property prediction tools supporting drug design and development at Novartis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expansion of the zinc metallo-hydrolase family of the beta-lactamase fold

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bacterial enzymatic resistance: beta-lactamases and aminoglycoside-modifying enzymes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Zn(II) Dependence of theAeromonas hydrophilaAE036 Metallo-β-lactamase Activity and Stability†

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide and amino acid sequences of the metallo-beta-lactamase, ImiS, from Aeromonas veronii bv. sobria

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Risk factors for epidemic Xanthomonas maltophilia infection/colonization in intensive care unit patients

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bloodstream infections with metallo-beta-lactamase-producing Pseudomonas aeruginosa: epidemiology, microbiology, and clinical outcomes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ampC cephalosporinase of Escherichia coli K-12 has a different evolutionary origin from that of beta-lactamases of the penicillinase type

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Metallo-beta-lactamases: a class apart.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Metallo-beta-lactamase inhibitors: promise for the future?

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nosocomial infections due to Xanthomonas maltophilia (Pseudomonas maltophilia) in patients with cancer

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Development and testing of a general amber force field

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of the metal-binding sites of the beta-lactamase from Bacteroides fragilis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Standard numbering scheme for class B beta-lactamases

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Successful molecular dynamics simulation of the zinc-bound farnesyltransferase using the cationic dummy atom approach.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Beta-lactamase-inhibitor combinations in the 21st century: current agents and new developments

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Over-expression, purification, and characterization of metallo-beta-lactamase ImiS from Aeromonas veronii bv. sobria

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The crisis in antibiotic resistance

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

First nosocomial outbreak of Pseudomonas aeruginosa producing an integron-borne metallo-beta-lactamase (VIM-2) in the United States

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dissemination in distinct Brazilian regions of an epidemic carbapenem-resistant Pseudomonas aeruginosa producing SPM metallo-beta-lactamase

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Update of the standard numbering scheme for class B beta-lactamases

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

blaVIM-7, an evolutionarily distinct metallo-beta-lactamase gene in a Pseudomonas aeruginosa isolate from the United States

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The impact of antibiotic use on resistance development and persistence

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Virtual screening against metalloenzymes for inhibitors and substrates

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mimicking natural evolution in metallo-beta-lactamases through second-shell ligand mutations

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Irreversible inhibition of metallo-beta-lactamase (IMP-1) by 3-(3-mercaptopropionylsulfanyl)propionic acid pentafluorophenyl ester

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dynamics of the metallo-beta-lactamase from Bacteroides fragilis in the presence and absence of a tight-binding inhibitor

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of the IMP-1 metallo beta-lactamase from Pseudomonas aeruginosa and its complex with a mercaptocarboxylate inhibitor: binding determinants of a potent, broad-spectrum inhibitor

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

1.85 A resolution structure of the zinc (II) beta-lactamase from Bacillus cereus

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Insight into the mechanism of the IMP-1 metallo-beta-lactamase by molecular dynamics simulations

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spread of integron-associated VIM-type metallo-beta-lactamase genes among imipenem-nonsusceptible Pseudomonas aeruginosa strains in Greek hospitals

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Integron carrying a novel metallo-beta-lactamase gene, blaIMP-16, and a fused form of aminoglycoside-resistant gene aac(6')-30/aac(6')-Ib': report from the SENTRY Antimicrobial Surveillance Program.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Amber biomolecular simulation programs

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The crystal structure of the L1 metallo-beta-lactamase from Stenotrophomonas maltophilia at 1.7 A resolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

First occurrence of a Pseudomonas aeruginosa isolate in the United States producing an IMP metallo-beta-lactamase, IMP-18.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence analysis and enzyme kinetics of the L2 serine beta-lactamase from Stenotrophomonas maltophilia

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modeling of the metallo-beta-lactamase from B. fragilis: structural and dynamic effects of inhibitor binding.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Biochemical and structural characterization of Salmonella typhimurium glyoxalase II: new insights into metal ion selectivity

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NMR characterization of the metallo-beta-lactamase from Bacteroides fragilis and its interaction with a tight-binding inhibitor: role of an active-site loop

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Beta-lactamases

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antibiotic resistance: origins, evolution and spread. Ciba Foundation Symposium, 16-18 July 1996, London

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Successful molecular dynamics simulation of two zinc complexes bridged by a hydroxide in phosphotriesterase using the cationic dummy atom method

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PCR detection of metallo-beta-lactamase gene (blaIMP) in gram-negative rods resistant to broad-spectrum beta-lactams

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Impact of remote mutations on metallo-beta-lactamase substrate specificity: implications for the evolution of antibiotic resistance

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Purification, characterization, and kinetic studies of a soluble Bacteroides fragilis metallo-beta-lactamase that provides multiple antibiotic resistance

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Zinc binding in proteins and solution: a simple but accurate nonbonded representation

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of a solvent-exposed tryptophan in the recognition and binding of antibiotic substrates for a metallo-beta-lactamase

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The structure of β-lactamases

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of the wide-spectrum binuclear zinc beta-lactamase from Bacteroides fragilis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modeling domino effects in enzymes: molecular basis of the substrate specificity of the bacterial metallo-beta-lactamases IMP-1 and IMP-6.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Outer membrane permeability and beta-lactamase content in Pseudomonas maltophilia clinical isolates and laboratory mutants

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The emergence and implications of metallo-beta-lactamases in Gram-negative bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein dynamics and catalysis: the problems of transition state theory and the subtlety of dynamic control

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

VIM-1 Metallo-beta-lactamase-producing Klebsiella pneumoniae strains in Greek hospitals

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Metallo-beta-lactamases: the quiet before the storm?

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In70 of plasmid pAX22, a bla(VIM-1)-containing integron carrying a new aminoglycoside phosphotransferase gene cassette.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antibacterial resistance worldwide: causes, challenges and responses

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Network of coupled promoting motions in enzyme catalysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Infections caused by Pseudomonas maltophilia. Expanding clinical spectrum.

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antibiotic resistance: the new apocalypse?

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

X-ray structure of the ZnII beta-lactamase from Bacteroides fragilis in an orthorhombic crystal form

1 reference

https://pubmed.ncbi.nlm.nih.gov/19039608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00894-008-0410-0

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19039608%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19039608%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q57186127&oldid=1977585563"