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Detection and removal of barcode swapping in single-cell RNA-seq data
scientific article published in Nature Communications
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scholarly article
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Europe PubMed Central
PMC publication ID
6039488
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29991676%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 April 2020
title
Detection and removal of barcode swapping in single-cell RNA-seq data
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
6039488
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29991676%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 April 2020
main subject
general chemistry
0 references
RNA sequencing
1 reference
based on heuristic
inferred from title
single-cell RNA-seq
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inferred from title
author
Jonathan A Griffiths
series ordinal
1
1 reference
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Europe PubMed Central
PMC publication ID
6039488
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29991676%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 April 2020
Arianne C Richard
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2
1 reference
stated in
Europe PubMed Central
PMC publication ID
6039488
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29991676%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 April 2020
Aaron Lun
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
6039488
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29991676%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 April 2020
John Marioni
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMC publication ID
6039488
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29991676%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 April 2020
author name string
Karsten Bach
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
6039488
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29991676%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 April 2020
language of work or name
English
0 references
publication date
10 July 2018
1 reference
stated in
Europe PubMed Central
PMC publication ID
6039488
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29991676%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 April 2020
published in
Nature Communications
1 reference
stated in
Europe PubMed Central
PMC publication ID
6039488
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29991676%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 April 2020
volume
9
1 reference
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Europe PubMed Central
PMC publication ID
6039488
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29991676%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 April 2020
issue
1
1 reference
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Europe PubMed Central
PMC publication ID
6039488
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29991676%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 April 2020
page(s)
2667
1 reference
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Europe PubMed Central
PMC publication ID
6039488
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29991676%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 April 2020
copyright license
Creative Commons Attribution 4.0 International
start time
10 July 2018
1 reference
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April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6039488
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2 November 2018
Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing
1 reference
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PubMed Central
reference URL
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2 November 2018
Massively parallel digital transcriptional profiling of single cells
1 reference
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PubMed Central
reference URL
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2 November 2018
Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6039488
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2 November 2018
A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6039488
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2 November 2018
A single-cell resolution map of mouse hematopoietic stem and progenitor cell differentiation
1 reference
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PubMed Central
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2 November 2018
CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6039488
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2 November 2018
Combined Single-Cell Functional and Gene Expression Analysis Resolves Heterogeneity within Stem Cell Populations
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PubMed Central
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2 November 2018
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6039488
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2 November 2018
Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6039488
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2 November 2018
Full-length RNA-seq from single cells using Smart-seq2.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6039488
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2 November 2018
T cell cytolytic capacity is independent of initial stimulation strength
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41467-018-05083-X
retrieved
7 January 2021
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Computational correction of index switching in multiplexed sequencing libraries
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41467-018-05083-X
retrieved
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based on heuristic
inferred from DOI database lookup
Distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FS41467-018-05083-X
retrieved
7 January 2021
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Identifiers
DOI
10.1038/S41467-018-05083-X
1 reference
stated in
Europe PubMed Central
PMC publication ID
6039488
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29991676%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 April 2020
ADS bibcode
2018NatCo...9.2667G
0 references
PMC publication ID
6039488
1 reference
stated in
Europe PubMed Central
PMC publication ID
6039488
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29991676%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 April 2020
PubMed publication ID
29991676
1 reference
stated in
Europe PubMed Central
PMC publication ID
6039488
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29991676%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 April 2020
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