(Q47122082)

8 January 2018

title

Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing (English)

1 reference

8 January 2018

single cell transcriptomics

main subject

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

James Hadfield

4

0 references

Marta Grzelak

object named as

Marta Grzelak

3

0 references

John Marioni

object named as

John C Marioni

6

0 references

Walid T Khaled

7

object named as

Walid T Khaled

1 reference

8 January 2018

author name string

Karsten Bach

1

1 reference

8 January 2018

Sara Pensa

2

1 reference

8 January 2018

David J Adams

5

1 reference

8 January 2018

language of work or name

English

0 references

publication date

11 December 2017

1 reference

8 January 2018

external data available at URL

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE106273

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

published in

Nature Communications

1 reference

8 January 2018

volume

8

1 reference

8 January 2018

issue

1

1 reference

8 January 2018

page(s)

2128

1 reference

8 January 2018

Creative Commons Attribution 4.0 International

copyright license

start time

1 December 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

breast

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

10x Genomics Chromium

1 reference

A curated database reveals trends in single-cell transcriptomics

Massively parallel digital transcriptional profiling of single cells

7 February 2021

cites work

1 reference

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23 May 2018

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Single-cell lineage tracing in the mammary gland reveals stochastic clonal dispersion of stem/progenitor cell progeny.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Pooling across cells to normalize single-cell RNA sequencing data with many zero counts.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

destiny: diffusion maps for large-scale single-cell data in R.

23 May 2018

1 reference

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Diffusion maps for high-dimensional single-cell analysis of differentiation data.

23 May 2018

1 reference

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Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

23 May 2018

1 reference

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An epigenetic memory of pregnancy in the mouse mammary gland

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Mammary gland development: cell fate specification, stem cells and the microenvironment

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

RUNX1, a transcription factor mutated in breast cancer, controls the fate of ER-positive mammary luminal cells.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Identification of multipotent mammary stem cells by protein C receptor expression.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Notch3 marks clonogenic mammary luminal progenitor cells in vivo.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

HMGA1: a master regulator of tumor progression in triple-negative breast cancer cells

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Epigenetic modifications unlock the milk protein gene loci during mouse mammary gland development and differentiation

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

HMGA1 reprograms somatic cells into pluripotent stem cells by inducing stem cell transcriptional networks

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Phenotypic and functional characterisation of the luminal cell hierarchy of the mammary gland

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Developmental stage and time dictate the fate of Wnt/β-catenin-responsive stem cells in the mammary gland

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Pericytes: developmental, physiological, and pathological perspectives, problems, and promises

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

BRCA1 basal-like breast cancers originate from luminal epithelial progenitors and not from basal stem cells

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Aberrant luminal progenitors as the candidate target population for basal tumor development in BRCA1 mutation carriers

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

The Ets transcription factor Elf5 specifies mammary alveolar cell fate

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Mammary development in the embryo and adult: a journey of morphogenesis and commitment

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Gata-3 is an essential regulator of mammary-gland morphogenesis and luminal-cell differentiation

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Post-lactational mammary gland regression: molecular basis and implications for breast cancer

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

GATA-3 maintains the differentiation of the luminal cell fate in the mammary gland

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

The mammary bud as a skin appendage: unique and shared aspects of development

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Generation of a functional mammary gland from a single stem cell

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Purification and unique properties of mammary epithelial stem cells

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Information networks in the mammary gland.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Key stages of mammary gland development: molecular mechanisms involved in the formation of the embryonic mammary gland

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Gene expression profiling of mammary gland development reveals putative roles for death receptors and immune mediators in post-lactational regression

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Clonal characterization of mouse mammary luminal epithelial and myoepithelial cells separated by fluorescence-activated cell sorting

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Think globally, act locally: the making of a mouse mammary gland.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Regulation of Cell Division in Aging Mouse Mammary Epithelium

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Identification of quiescent and spatially restricted mammary stem cells that are hormone responsive.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Identity and dynamics of mammary stem cells during branching morphogenesis.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Diffusion pseudotime robustly reconstructs lineage branching

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

In situ identification of bipotent stem cells in the mammary gland.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

An adjunct mammary epithelial cell population in parous females: its role in functional adaptation and tissue renewal.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723634

Distinct stem cells contribute to mammary gland development and maintenance

15 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41467-017-02001-5

Cidea is an essential transcriptional coactivator regulating mammary gland secretion of milk lipids

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41467-017-02001-5

7 January 2021

inferred from DOI database lookup

Detection and removal of barcode swapping in single-cell RNA-seq data

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41467-017-02001-5

7 January 2021

inferred from DOI database lookup

Regulation of growth and spacing of gland elements in the mammary fat pad of the C3H mouse

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29225342

12 December 2020

inferred from PubMed ID database lookup

Detection and removal of barcode swapping in single-cell RNA-seq data

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29225342

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/S41467-017-02001-5

1 reference

8 January 2018

0 references

1 reference

8 January 2018

PubMed publication ID

29225342

1 reference

8 January 2018