(Q57753836)

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Comprehensive search for accessory proteins encoded with archaeal and bacterial type III CRISPR-cas gene cassettes reveals 39 new cas gene families

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31 March 2020

Comprehensive search for accessory proteins encoded with archaeal and bacterial type III CRISPR-cas gene cassettes reveals 39 new cas gene families (English)

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31 March 2020

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31 March 2020

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31 March 2020

Wolfgang René Hess

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31 March 2020

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31 March 2020

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31 March 2020

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Omer S Alkhnbashi

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31 March 2020

Juliane Behler

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31 March 2020

Roger A Garrett

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31 March 2020

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19 June 2018

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31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

530-542

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31 March 2020

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Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International

19 June 2018

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A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An efficient algorithm for large-scale detection of protein families

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The HHpred interactive server for protein homology detection and structure prediction

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome Analyses of Icelandic Strains of Sulfolobus islandicus, Model Organisms for Genetic and Virus-Host Interaction Studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural and Functional Characterization of an Archaeal Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Complex for Antiviral Defense (CASCADE)

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution and classification of the CRISPR-Cas systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic analysis of Acidianus hospitalis W1 a host for studying crenarchaeal virus and plasmid life cycles

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and activity of the Cas3 HD nuclease MJ0384, an effector enzyme of the CRISPR interference

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Pfam protein families database

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and Mechanism of the CMR Complex for CRISPR-Mediated Antiviral Immunity

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of Cmr2 suggests a nucleotide cyclase-related enzyme in type III CRISPR-Cas systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative genomic and transcriptional analyses of CRISPR systems across the genus Pyrobaculum.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure and nucleic acid-binding activity of the CRISPR-associated protein Csx1 of Pyrococcus furiosus

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Live virus-free or die: coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protospacer recognition motifs: mixed identities and functional diversity

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CRISPR-Cas systems in the cyanobacterium Synechocystis sp. PCC6803 exhibit distinct processing pathways involving at least two Cas6 and a Cmr2 protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Adaptation and modification of three CRISPR loci in two closely related cyanobacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and activity of the RNA-targeting Type III-B CRISPR-Cas complex of Thermus thermophilus

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic characterization of antiplasmid immunity through a type III-A CRISPR-Cas system

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CRISPR adaptive immune systems of Archaea

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CARF and WYL domains: ligand-binding regulators of prokaryotic defense systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural model of a CRISPR RNA-silencing complex reveals the RNA-target cleavage activity in Cmr4

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Target RNA capture and cleavage by the Cmr type III-B CRISPR-Cas effector complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An archaeal CRISPR type III-B system exhibiting distinctive RNA targeting features and mediating dual RNA and DNA interference.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structures of CRISPR-associated Csx3 reveal a manganese-dependent deadenylation exoribonuclease.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An updated evolutionary classification of CRISPR-Cas systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recognition of a pseudo-symmetric RNA tetranucleotide by Csx3, a new member of the CRISPR associated Rossmann fold superfamily.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural basis for the endoribonuclease activity of the type III-A CRISPR-associated protein Csm6

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiple nucleic acid cleavage modes in divergent type III CRISPR systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bipartite recognition of target RNAs activates DNA cleavage by the Type III-B CRISPR-Cas system

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterizing leader sequences of CRISPR loci

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural constraints and enzymatic promiscuity in the Cas6-dependent generation of crRNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Type III CRISPR-Cas Immunity: Major Differences Brushed Aside

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CRISPR-Cas type I-A Cascade complex couples viral infection surveillance to host transcriptional regulation in the dependence of Csa3b

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A type III-B CRISPR-Cas effector complex mediating massive target DNA destruction

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A cyclic oligonucleotide signaling pathway in type III CRISPR-Cas systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Type III CRISPR-Cas systems produce cyclic oligoadenylate second messengers.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Discovery, Mechanisms, and Evolutionary Impact of Anti-CRISPRs

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Coupling transcriptional activation of CRISPR-Cas system and DNA repair genes by Csa3a in Sulfolobus islandicus

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Discovery of Oligonucleotide Signaling Mediated by CRISPR-Associated Polymerases Solves Two Puzzles but Leaves an Enigma

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Allosteric regulation of Csx1, a type IIIB-associated CARF domain ribonuclease by RNAs carrying a tetraadenylate tail

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The host-encoded RNase E endonuclease as the crRNA maturation enzyme in a CRISPR-Cas subtype III-Bv system

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Anti-CRISPR proteins encoded by archaeal lytic viruses inhibit subtype I-D immunity.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Systematic prediction of genes functionally linked to CRISPR-Cas systems by gene neighborhood analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/29911924

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1080/15476286.2018.1483685

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29911924%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29911924%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29911924%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

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