(Q58065248)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24471963%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

title

The potential for manipulating RNA with pentatricopeptide repeat proteins (English)

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6 March 2020

3

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6 March 2020

author name string

Yusuke Yagi

series ordinal

1

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6 March 2020

Takahiro Nakamura

series ordinal

2

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6 March 2020

publication date

29 January 2014

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6 March 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24471963%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

volume

78

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6 March 2020

issue

5

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6 March 2020

page(s)

772-782

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Classification and comparison of small RNAs from plants

6 March 2020

cites work

1 reference

Structure of a PLS-class Pentatricopeptide Repeat Protein Provides Insights into Mechanism of RNA Recognition

21 January 2018

1 reference

A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins.

21 January 2018

1 reference

The pentatricopeptide repeat protein PPR5 stabilizes a specific tRNA precursor in maize chloroplasts

21 January 2018

1 reference

RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing

21 January 2018

1 reference

Localization of ASH1 mRNA particles in living yeast

21 January 2018

1 reference

Ubiquitination of mRNA cycling sequence binding protein from Leishmania donovani (LdCSBP) modulates the RNA endonuclease activity of its Smr domain.

21 January 2018

1 reference

The bicoid stability factor controls polyadenylation and expression of specific mitochondrial mRNAs in Drosophila melanogaster

21 January 2018

1 reference

Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting

21 January 2018

1 reference

21 January 2018

1 reference

Protein families and RNA recognition

21 January 2018

1 reference

Cell-free selection of RNA-binding proteins using in vitro compartmentalization

21 January 2018

1 reference

Engineering RNA sequence specificity of Pumilio repeats.

21 January 2018

1 reference

Engineering RNA endonucleases with customized sequence specificities

21 January 2018

1 reference

RNA recognition motifs: boring? Not quite

21 January 2018

1 reference

Systematic study of subcellular localization of Arabidopsis PPR proteins confirms a massive targeting to organelles

21 January 2018

1 reference

Multiplex genome engineering using CRISPR/Cas systems

21 January 2018

1 reference

Targeted translational regulation using the PUF protein family scaffold

21 January 2018

1 reference

The Rf and Rf-like PPR in higher plants, a fast-evolving subclass of PPR genes

21 January 2018

1 reference

Current prospects for RNA interference-based therapies

21 January 2018

1 reference

Translation driven by an eIF4G core domain in vivo

21 January 2018

1 reference

Specific and Modular Binding Code for Cytosine Recognition in Pumilio/FBF (PUF) RNA-binding Domains

21 January 2018

1 reference

Structure of Pumilio reveals similarity between RNA and peptide binding motifs

21 January 2018

1 reference

Nuclearly encoded splicing factors implicated in RNA splicing in higher plant organelles

21 January 2018

1 reference

Modular recognition of nucleic acids by PUF, TALE and PPR proteins

21 January 2018

1 reference

A universal code for RNA recognition by PUF proteins

21 January 2018

1 reference

The evolution of RNA editing and pentatricopeptide repeat genes.

21 January 2018

1 reference

Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution.

21 January 2018

1 reference

Mutagenesis of individual pentatricopeptide repeat motifs affects RNA binding activity and reveals functional partitioning of Arabidopsis PROTON gradient regulation3.

21 January 2018

1 reference

A single Arabidopsis organellar protein has RNase P activity.

21 January 2018

1 reference

Structural insights into protein-only RNase P complexed with tRNA.

21 January 2018

1 reference

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

21 January 2018

1 reference

The pentatricopeptide repeat MTSF1 protein stabilizes the nad4 mRNA in Arabidopsis mitochondria

21 January 2018

1 reference

A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.

21 January 2018

1 reference

An Arabidopsis dual-localized pentatricopeptide repeat protein interacts with nuclear proteins involved in gene expression regulation.

21 January 2018

1 reference

21 January 2018

1 reference

Genome-wide analysis of RNA-protein interactions illustrates specificity of the mRNA export machinery

21 January 2018

1 reference

Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing

21 January 2018

1 reference

Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems

21 January 2018

1 reference

MicroRNAS and their regulatory roles in plants

21 January 2018

1 reference

Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice

21 January 2018

1 reference

Stacking interactions in PUF-RNA complexes

21 January 2018

1 reference

Apolipoprotein B mRNA-editing, catalytic polypeptide cytidine deaminases and retroviral restriction

21 January 2018

1 reference

Analysis of RNA-binding proteins by in vitro genetic selection: identification of an amino acid residue important for locking U1A onto its RNA target

21 January 2018

1 reference

PPR-SMRs: ancient proteins with enigmatic functions

21 January 2018

1 reference

Alternate Modes of Cognate RNA Recognition by Human PUMILIO Proteins

21 January 2018

1 reference

Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis

21 January 2018

1 reference

RNA-guided human genome engineering via Cas9

21 January 2018

1 reference

Plastid biotechnology: food, fuel, and medicine for the 21st century

21 January 2018

1 reference

BSF binds specifically to the bicoid mRNA 3' untranslated region and contributes to stabilization of bicoid mRNA

21 January 2018

1 reference

21 January 2018

1 reference

Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p

21 January 2018

1 reference

PNAzymes that are artificial RNA restriction enzymes

21 January 2018

1 reference

Mechanistic insight into pentatricopeptide repeat proteins as sequence-specific RNA-binding proteins for organellar RNAs in plants

21 January 2018

1 reference

On the expansion of the pentatricopeptide repeat gene family in plants

21 January 2018

1 reference

Advances in targeted genome editing

21 January 2018

1 reference

Site-directed nucleases: a paradigm shift in predictable, knowledge-based plant breeding.

21 January 2018

1 reference

Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein

21 January 2018

1 reference

Repression of essential chloroplast genes reveals new signaling pathways and regulatory feedback loops in chlamydomonas.

21 January 2018

1 reference

Short non-coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins?

21 January 2018

1 reference

A hypothesis on the identification of the editing enzyme in plant organelles

21 January 2018

1 reference

A survey of PPR proteins identifies DYW domains like those of land plant RNA editing factors in diverse eukaryotes.

21 January 2018

1 reference

Pentatricopeptide repeat proteins: a socket set for organelle gene expression.

21 January 2018

1 reference

RNA immunoprecipitation and microarray analysis show a chloroplast Pentatricopeptide repeat protein to be associated with the 5' region of mRNAs whose translation it activates

21 January 2018

1 reference

In vitro selection, characterization, and application of deoxyribozymes that cleave RNA

21 January 2018

1 reference

The PPR motif - a TPR-related motif prevalent in plant organellar proteins

21 January 2018

1 reference

Alternative splicing in plants--coming of age.

21 January 2018

1 reference

Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants

21 January 2018

1 reference

Improved computational target site prediction for pentatricopeptide repeat RNA editing factors

21 January 2018

1 reference

Live-cell imaging of viral RNA genomes using a Pumilio-based reporter

21 January 2018

1 reference

Characterization of Raphanus sativus pentatricopeptide repeat proteins encoded by the fertility restorer locus for Ogura cytoplasmic male sterility

21 January 2018

1 reference

Translational control of eukaryotic gene expression

21 January 2018

1 reference

Modular recognition of RNA by a human pumilio-homology domain

21 January 2018

1 reference

Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing

21 January 2018

1 reference

Engineering splicing factors with designed specificities

21 January 2018

1 reference

Engineered proteins with Pumilio/fem-3 mRNA binding factor scaffold to manipulate RNA metabolism

21 January 2018

1 reference

Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants

21 January 2018

1 reference

Pentatricopeptide repeat proteins involved in plant organellar RNA editing

21 January 2018

1 reference

Structural basis for the modular recognition of single-stranded RNA by PPR proteins

21 January 2018

1 reference

Extensive RNA editing of U to C in addition to C to U substitution in the rbcL transcripts of hornwort chloroplasts and the origin of RNA editing in green plants

21 January 2018

1 reference

Protein-mediated protection as the predominant mechanism for defining processed mRNA termini in land plant chloroplasts

21 January 2018

1 reference

MicroRNA-mediated gene regulation: potential applications for plant genetic engineering.

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1111/TPJ.12377

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24471963%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

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