(Q37873957)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21557747%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

review article

1 reference

title

The evolution of RNA editing and pentatricopeptide repeat genes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21557747%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21557747%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

author name string

Sota Fujii

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21557747%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

language of work or name

English

0 references

publication date

9 May 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21557747%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21557747%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

volume

191

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21557747%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21557747%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

page(s)

37-47

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21557747%20AND%20SRC:MED&resulttype=core&format=json

Comparisons among two fertile and three male-sterile mitochondrial genomes of maize

31 January 2020

cites work

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The nuclear component of a cytonuclear hybrid incompatibility in Mimulus maps to a cluster of pentatricopeptide repeat genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

A pentatricopeptide repeat-containing gene restores fertility to cytoplasmic male-sterile plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Natural variation in Arabidopsis leads to the identification of REME1, a pentatricopeptide repeat-DYW protein controlling the editing of mitochondrial transcripts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Gene expression in plant mitochondria: transcriptional and post-transcriptional control

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The radish Rfo restorer gene of Ogura cytoplasmic male sterility encodes a protein with multiple pentatricopeptide repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

LPA66 is required for editing psbF chloroplast transcripts in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

OTP70 is a pentatricopeptide repeat protein of the E subgroup involved in splicing of the plastid transcript rpoC1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The origin and early diversification of angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Genome duplication and the origin of angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in post-transcriptional processes in organelles

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Identification of the fertility restoration locus, Rfo, in radish, as a member of the pentatricopeptide‐repeat protein family

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Molecular cloning of the maize gene crp1 reveals similarity between regulators of mitochondrial and chloroplast gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Occurrence of plastid RNA editing in all major lineages of land plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Editing of the chloroplast ndhB encoded transcript shows divergence between closely related members of the grass family (Poaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Discovery of global genomic re-organization based on comparison of two newly sequenced rice mitochondrial genomes with cytoplasmic male sterility-related genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Genes encoding pentatricopeptide repeat (PPR) proteins are not conserved in location in plant genomes and may be subject to diversifying selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

RNA editing in plant organelles: a fertile field

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

RNA editing in plant mitochondria: 20 years later

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Evolution of a pseudogene: exclusive survival of a functional mitochondrial nad7 gene supports Haplomitrium as the earliest liverwort lineage and proposes a secondary loss of RNA editing in Marchantiidae

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Solar ultraviolet radiation-induced DNA damage in aquatic organisms: potential environmental impact

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Pentatricopeptide repeat proteins constrain genome evolution in chloroplasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Characterization of a DNA-binding protein implicated in transcription in wheat mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Did RNA editing in plant organellar genomes originate under natural selection or through genetic drift?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

A pentatricopeptide repeat-containing gene that promotes the processing of aberrant atp6 RNA of cytoplasmic male-sterile rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

DYW-type PPR proteins in a heterolobosean protist: plant RNA editing factors involved in an ancient horizontal gene transfer?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Genetic characterization of a pentatricopeptide repeat protein gene, orf687, that restores fertility in the cytoplasmic male‐sterile Kosena radish

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Map-based cloning of a fertility restorer gene, Rf-1, in rice (Oryza sativa L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Angiosperm mitochondrial genomes and mutations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(Cys)(GCA)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

RNA editing in hornwort chloroplasts makes more than half the genes functional

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Exploring plant biodiversity: the Physcomitrella genome and beyond.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

RNA editing in plant mitochondria and chloroplasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Complex chloroplast RNA metabolism: just debugging the genetic programme?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The Saccharomyces cerevisiae Pet309 protein is embedded in the mitochondrial inner membrane

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The Chlamydomonas genome reveals the evolution of key animal and plant functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The plant mitochondrial proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Tissue- and stage-specific RNA editing of rps 14 transcripts in moss (Physcomitrella patens) chloroplasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

RNA editing site recognition in higher plant mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Structural dynamics of cereal mitochondrial genomes as revealed by complete nucleotide sequencing of the wheat mitochondrial genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Targeted gene disruption identifies three PPR-DYW proteins involved in RNA editing for five editing sites of the moss mitochondrial transcripts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

On the expansion of the pentatricopeptide repeat gene family in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Site-specific binding of a PPR protein defines and stabilizes 5' and 3' mRNA termini in chloroplasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Pentatricopeptide repeat proteins in Trypanosoma brucei function in mitochondrial ribosomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The role of UV-B radiation in aquatic and terrestrial ecosystems--an experimental and functional analysis of the evolution of UV-absorbing compounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Organellar RNA editing and plant-specific extensions of pentatricopeptide repeat proteins in jungermanniid but not in marchantiid liverworts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Pentatricopeptide repeat proteins and their emerging roles in plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Pentatricopeptide repeat proteins: a socket set for organelle gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

RNA immunoprecipitation and microarray analysis show a chloroplast Pentatricopeptide repeat protein to be associated with the 5' region of mRNAs whose translation it activates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

RNA editing in plant organelles: machinery, physiological function and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Extensive loss of RNA editing sites in rapidly evolving Silene mitochondrial genomes: selection vs. retroprocessing as the driving force

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The PPR motif - a TPR-related motif prevalent in plant organellar proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Unparalleled GC content in the plastid DNA of Selaginella

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Chloroplast RNA metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The complete nucleotide sequence and multipartite organization of the tobacco mitochondrial genome: comparative analysis of mitochondrial genomes in higher plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The SLO1 PPR protein is required for RNA editing at multiple sites with similar upstream sequences in Arabidopsis mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The process of RNA editing in plant mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The mitochondrial PPR protein LOVASTATIN INSENSITIVE 1 plays regulatory roles in cytosolic and plastidial isoprenoid biosynthesis through RNA editing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The moss pentatricopeptide repeat protein with a DYW domain is responsible for RNA editing of mitochondrial ccmFc transcript.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The moss Physcomitrella patens, a model plant for the study of RNA editing in plant organelles

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The pentatricopeptide repeats present in Pet309 are necessary for translation but not for stability of the mitochondrial COX1 mRNA in yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The rice mitochondrial genomes and their variations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Loss of matK RNA editing in seed plant chloroplasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Editing of accD and ndhF chloroplast transcripts is partially affected in the Arabidopsis vanilla cream1 mutant

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Characterization of Raphanus sativus pentatricopeptide repeat proteins encoded by the fertility restorer locus for Ogura cytoplasmic male sterility

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The PPR protein encoded by the LOVASTATIN INSENSITIVE 1 gene is involved in RNA editing at three sites in mitochondria of Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

High levels of RNA editing in a vascular plant chloroplast genome: analysis of transcripts from the fern Adiantum capillus-veneris.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

PAML 4: phylogenetic analysis by maximum likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

AtECB2, a pentatricopeptide repeat protein, is required for chloroplast transcript accD RNA editing and early chloroplast biogenesis in Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

RESOPS: a database for analyzing the correspondence of RNA editing sites to protein three-dimensional structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

A DYW domain-containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

A hypothesis on the identification of the editing enzyme in plant organelles

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

The multifarious roles of PPR proteins in plant mitochondrial gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X

Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1469-8137.2011.03746.X