(Q59116667)

2

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DONALD R. DAVIS

3

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ERIK J. VAN NIEUKERKEN

4

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MICHAEL P. CUMMINGS

5

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CHARLES MITTER

Basic local alignment search tool

6

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publication date

23 November 2016

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published in

Systematic Entomology

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volume

42

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page(s)

305-316

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issue

2

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cites work

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Can RNA-Seq resolve the rapid radiation of advanced moths and butterflies (Hexapoda: Lepidoptera: Apoditrysia)? An exploratory study

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

21 January 2018

GeneWise and Genomewise

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

De novo transcriptome assembly with ABySS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Selecting Question-Specific Genes to Reduce Incongruence in Phylogenomics: A Case Study of Jawed Vertebrate Backbone Phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

HaMStR: profile hidden markov model based search for orthologs in ESTs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Accelerated Profile HMM Searches

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Full-length transcriptome assembly from RNA-Seq data without a reference genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Amino acid substitution matrices from protein blocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Leveraging skewed transcript abundance by RNA-Seq to increase the genomic depth of the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Adding unaligned sequences into an existing alignment using MAFFT and LAST.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Phylogenomics provides strong evidence for relationships of butterflies and moths

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

PhyloTreePruner: A Phylogenetic Tree-Based Approach for Selection of Orthologous Sequences for Phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

A new extant family of primitive moths from Kangaroo Island, Australia, and its significance for understanding early Lepidoptera evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Transcriptome analysis of the silkworm (Bombyx mori) by high-throughput RNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Cutadapt removes adapter sequences from high-throughput sequencing reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Phylogenomics resolves the timing and pattern of insect evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

The Genome Sequence of Silkworm, Bombyx mori

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Comprehensive gene and taxon coverage elucidates radiation patterns in moths and butterflies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

The recently discovered primitive (non-Ditrysian) family Palaephatidae (Lepidoptera) in Australia

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

The Australian moth family Lophocoronidae and the basal phylogeny of the Lepidoptera – Glossata

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

T-Coffee: A novel method for fast and accurate multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Improved tools for biological sequence comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

BARCODING: bold: The Barcode of Life Data System (http://www.barcodinglife.org)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Increased yield of PCR product from degenerate primers with nondegenerate, nonhomologous 5' tails.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

A large-scale, higher-level, molecular phylogenetic study of the insect order Lepidoptera (moths and butterflies)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

A molecular phylogeny for the oldest (nonditrysian) lineages of extant Lepidoptera, with implications for classification, comparative morphology and life-history evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

A molecular phylogeny and revised classification for the oldest ditrysian moth lineages (Lepidoptera: Tineoidea), with implications for ancestral feeding habits of the mega-diverse Ditrysia

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

De novo assembly and analysis of RNA-seq data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Inferring ancient divergences requires genes with strong phylogenetic signals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Orthology, paralogy and proposed classification for paralog subtypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

DendroPy: a Python library for phylogenetic computing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

DBM-DB: the diamondback moth genome database.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Nuclear genes resolve mesozoic-aged divergences in the insect order Lepidoptera

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Combined molecular and morphological evidence on the phylogeny of the earliest lepidopteran lineages

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Analysis of compositionally biased regions in sequence databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FSYEN.12217