(Q59305220)

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High-throughput analysis of satellite DNA in the grasshopper Pyrgomorpha conica reveals abundance of homologous and heterologous higher-order repeats

scientific article published on 16 March 2018

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20 March 2020

High-throughput analysis of satellite DNA in the grasshopper Pyrgomorpha conica reveals abundance of homologous and heterologous higher-order repeats (English)

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20 March 2020

Pyrgomorpha conica

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Pyrgomorpha conica

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Francisco J Ruiz-Ruano

1

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20 March 2020

Jesús Castillo-Martínez

2

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20 March 2020

3

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20 March 2020

Juan Pedro M Camacho

5

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20 March 2020

María Dolores López-León

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María Dolores López-León

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20 March 2020

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Ricardo Gómez

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20 March 2020

publication date

16 March 2018

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20 March 2020

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20 March 2020

127

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20 March 2020

3

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20 March 2020

323-340

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20 March 2020

https://scigraph.springernature.com/pub.10.1007/s00412-018-0666-9

0 references

Genetic Variability of a Satellite Sequence in the Dipteran Musca domestica

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

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Fine mapping of satellite DNA sequences along the Y chromosome of Drosophila melanogaster: relationships between satellite sequences and fertility factors.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

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Evidence for rolling-circle replication in a major satellite DNA from the South American rodents of the genus Ctenomys

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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Genomic analysis of sequence variation in tandemly repeated DNA. Evidence for localized homogeneous sequence domains within arrays of alpha-satellite DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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Mouse satellite DNA, centromere structure, and sister chromatid pairing

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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Chromosome-specific subsets of human alpha satellite DNA: analysis of sequence divergence within and between chromosomal subsets and evidence for an ancestral pentameric repeat

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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Persistence of tandem arrays: implications for satellite and simple-sequence DNAs.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

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Identification of a specific telomere terminal transferase activity in Tetrahymena extracts

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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FISH analysis of the telomere sequences of bulldog ants (Myrmecia: Formicidae)

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Supernumerary heterochromatic segments associated with the nucleolar chromosomes of Pyrgomorpha conica (Orthoptera) contain methylated rDNA sequences.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolutionary dynamics of repetitive DNA in eukaryotes

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Possible role of natural selection in the formation of tandem-repetitive noncoding DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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Similarity of structural features and evolution of satellite DNAs from palorus subdepressus (Coleoptera) and related species

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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Conspiracy of silence among repeated transgenes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tandem repeats finder: a program to analyze DNA sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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Recognition and silencing of repeated DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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Genomic and genetic definition of a functional human centromere

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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BLAT—The BLAST-Like Alignment Tool

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Variation in satellite DNA profiles--causes and effects

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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Telomeric and interstitial telomeric-like DNA sequences in Orthoptera genomes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for rolling circle replication of tandem genes in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interstitial telomeric sequence blocks in constitutive pericentromeric heterochromatin from Pyrgomorpha conica (Orthoptera) are enriched in constitutive alkali-labile sites.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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Intra-specific variability and unusual organization of the repetitive units in a satellite DNA from Rana dalmatina: molecular evidence of a new mechanism of DNA repair acting on satellite DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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Satellite DNA junctions identify the potential origin of new repetitive elements in the beetle Tribolium madens.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

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Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

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Extrachromosomal circular DNA derived from tandemly repeated genomic sequences in plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

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Satellite DNAs between selfishness and functionality: structure, genomics and evolution of tandem repeats in centromeric (hetero)chromatin.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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Satellite DNA in insects: a review.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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Pycnotic cycle of the sex chromosome of Pyrgomorpha conica (Orthoptera) and development of spermiogenesis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Survey of extrachromosomal circular DNA derived from plant satellite repeats

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Extrachromosomal circles of satellite repeats and 5S ribosomal DNA in human cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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DNA amount of X and B chromosomes in the grasshoppers Eyprepocnemis plorans and Locusta migratoria

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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Fast identification and removal of sequence contamination from genomic and metagenomic datasets

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

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Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

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based on heuristic

inferred from PubMed ID database lookup

The 1.688 repetitive DNA of Drosophila: concerted evolution at different genomic scales and association with genes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Next generation sequencing-based analysis of repetitive DNA in the model dioecious [corrected] plant Silene latifolia

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fast gapped-read alignment with Bowtie 2

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

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inferred from PubMed ID database lookup

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

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Primer3--new capabilities and interfaces

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

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RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

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based on heuristic

inferred from PubMed ID database lookup

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

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based on heuristic

inferred from PubMed ID database lookup

Centromere identity from the DNA point of view

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

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based on heuristic

inferred from PubMed ID database lookup

Genome-wide analysis of repeat diversity across the family Musaceae

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ten years of next-generation sequencing technology

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

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inferred from PubMed ID database lookup

B chromosomes in the grasshopper Eyprepocnemis plorans are present in all body parts analyzed and show extensive variation for rDNA copy number.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The centromere: chromatin foundation for the kinetochore machinery

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Next generation sequencing and FISH reveal uneven and nonrandom microsatellite distribution in two grasshopper genomes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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A step to the gigantic genome of the desert locust: chromosome sizes and repeated DNAs.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

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Next-generation sequencing detects repetitive elements expansion in giant genomes of annual killifish genus Austrolebias (Cyprinodontiformes, Rivulidae).

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

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Higher-order repeat structure in alpha satellite DNA occurs in New World monkeys and is not confined to hominoids

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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Satellite DNA Modulates Gene Expression in the Beetle Tribolium castaneum after Heat Stress.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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Structural and functional liaisons between transposable elements and satellite DNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High-throughput analysis of the satellitome illuminates satellite DNA evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Satellite DNA content illuminates the ancestry of a supernumerary (B) chromosome.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Integrity of the human centromere DNA repeats is protected by CENP-A, CENP-C, and CENP-T.

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Satellite DNA: An Evolving Topic

1 reference

https://pubmed.ncbi.nlm.nih.gov/29549528

12 December 2020

based on heuristic

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Identifiers

10.1007/S00412-018-0666-9

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29549528%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29549528%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

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