(Q59794209)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

title

Spatially and functionally distinct subclasses of breast cancer-associated fibroblasts revealed by single cell RNA sequencing (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

single cell transcriptomics

12 April 2020

main subject

general chemistry

0 references

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

cancer-associated fibroblast

7 February 2021

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Matteo Bocci

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

John Lövrot

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Chris D Madsen

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Markus Ringnér

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Asa K Björklund

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Kristian Pietras

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

author name string

Nikolay Oskolkov

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Christer Larsson

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Mikael Sommarin

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

David Lindgren

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Gyula Pekar

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Göran Karlsson

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

Jonas Bergh

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

language of work or name

English

0 references

publication date

4 December 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

external data available at URL

12 April 2020

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE111229

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

published in

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

volume

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

page(s)

5150

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

12 April 2020

copyright license

start time

1 December 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/s41467-018-07582-3

0 references

cites work

The biology and function of fibroblasts in cancer

1 reference

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7 January 2021

Hallmarks of cancer: interactions with the tumor stroma.

1 reference

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7 January 2021

Accessories to the crime: functions of cells recruited to the tumor microenvironment

1 reference

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7 January 2021

Functional subsets of mesenchymal cell types in the tumor microenvironment

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Fibroblast Subtypes Regulate Responsiveness of Luminal Breast Cancer to Estrogen

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Targeting stromal remodeling and cancer stem cell plasticity overcomes chemoresistance in triple negative breast cancer

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Fibroblast Heterogeneity and Immunosuppressive Environment in Human Breast Cancer.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors

1 reference

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7 January 2021

CD10+GPR77+ Cancer-Associated Fibroblasts Promote Cancer Formation and Chemoresistance by Sustaining Cancer Stemness.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Discovery of Endothelial to Mesenchymal Transition as a Source for Carcinoma-Associated Fibroblasts

1 reference

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7 January 2021

On the origin of cancer-associated fibroblasts

1 reference

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7 January 2021

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Expression of the neu protooncogene in the mammary epithelium of transgenic mice induces metastatic disease

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Progression to Malignancy in the Polyoma Middle T Oncoprotein Mouse Breast Cancer Model Provides a Reliable Model for Human Diseases

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

SC3: consensus clustering of single-cell RNA-seq data

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

The matrisome: in silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

ROTS: reproducible RNA-seq biomarker detector-prognostic markers for clear cell renal cell cancer

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Bayesian approach to single-cell differential expression analysis

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

1 reference

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7 January 2021

On a Test of Whether one of Two Random Variables is Stochastically Larger than the Other

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Computational assignment of cell-cycle stage from single-cell transcriptome data

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Proteomics. Tissue-based map of the human proteome

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Comprehensive molecular portraits of human breast tumours

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

The expression pattern of matrix-producing tumor stroma is of prognostic importance in breast cancer

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

An Endothelial Gene Signature Score Predicts Poor Outcome in Patients with Endocrine-Treated, Low Genomic Grade Breast Tumors.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Biological Processes Associated with Breast Cancer Clinical Outcome Depend on the Molecular Subtypes

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

A comparison of PAM50 intrinsic subtyping with immunohistochemistry and clinical prognostic factors in tamoxifen-treated estrogen receptor-positive breast cancer

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

The breast cancer oncogene EMSY represses transcription of antimetastatic microRNA miR-31.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

The somatic mutation profiles of 2,433 breast cancers refines their genomic and transcriptomic landscapes

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Endosialin (Tem1) is a marker of tumor-associated myofibroblasts and tumor vessel-associated mural cells

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Origin and function of myofibroblasts in kidney fibrosis

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Epithelial-to-mesenchymal transition leads to loss of EpCAM and different physical properties in circulating tumor cells from metastatic breast cancer.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Depletion of carcinoma-associated fibroblasts and fibrosis induces immunosuppression and accelerates pancreas cancer with reduced survival

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Stromal elements act to restrain, rather than support, pancreatic ductal adenocarcinoma

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Microenvironmental control of breast cancer subtype elicited through paracrine platelet-derived growth factor-CC signaling.

1 reference

https://api.crossref.org/works/10.1038%2FS41467-018-07582-3

7 January 2021

Evolutionary Divergence of Platelet-Derived Growth Factor Alpha Receptor Signaling Mechanisms

1 reference

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7 January 2021

STAR: ultrafast universal RNA-seq aligner

1 reference

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7 January 2021

An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data

1 reference

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7 January 2021

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

1 reference

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7 January 2021

The Sweden Cancerome Analysis Network - Breast (SCAN-B) Initiative: a large-scale multicenter infrastructure towards implementation of breast cancer genomic analyses in the clinical routine

1 reference

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7 January 2021

Endothelial ALK1 Is a Therapeutic Target to Block Metastatic Dissemination of Breast Cancer.

1 reference

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7 January 2021

A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/30514914

12 December 2020

inferred from PubMed ID database lookup

Distinct populations of inflammatory fibroblasts and myofibroblasts in pancreatic cancer.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/30514914

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/S41467-018-07582-3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30514914%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

1 reference